FYI: it is my understanding that such tools cannot be used in a workflow at this time. On Feb 19, 2014 10:08 AM, "Carlos Borroto" <carlos.borr...@gmail.com> wrote:
> On Wednesday, February 19, 2014, Peter Cock <p.j.a.c...@googlemail.com> > wrote: > >> On Wed, Feb 19, 2014 at 2:16 PM, John Chilton <jmchil...@bx.psu.edu> >> wrote: >> > Hey Peter, >> > >> > Have you seen this solution? >> > >> > >> https://wiki.galaxyproject.org/Admin/Tools/Multiple%20Output%20Files#Number_of_Output_datasets_cannot_be_determined_until_tool_run >> > >> > It always seems to get mentioned when this topic is brought up. It has >> > serious limitations in terms or workflow running, but it can probably >> > be made to work for individual tool executions. >> >> Hmm. Any real life examples of this in use? I guess looking for >> the magic string $__new_file_path__ in the <command> tag >> is the only way to identify this? >> >> > Hi Peter, > > I used the current functionality here: > http://toolshed.g2.bx.psu.edu/view/cjav/split_by_barcode > > The code for the underlining tool is available here: > https://github.com/cjav/ngs-tools > > Hope it helps, > Carlos > > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > http://lists.bx.psu.edu/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ >
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