Hi everyone,
I've been getting my feet wet with Galaxy development working to get some of
the rexpression tools online, and I've run into a snag that I've traced back to
a set_meta datatype method not being able to find a file from which it wants to
extract metadata. After reading the code, I
...@lists.bx.psu.edu [galaxy-dev-boun...@lists.bx.psu.edu]
on behalf of Paniagua, Eric [epani...@cshl.edu]
Sent: Monday, September 12, 2011 7:37 PM
To: galaxy-dev@lists.bx.psu.edu
Subject: Re: [galaxy-dev] (Composite) Dataset Upload not Setting Metadata
Hello again,
It looks like
Hi Leandro,
Is there an entry in your history for the upload? What file format does it
show? Is there any chance your original file was zipped? If Galaxy detected
it as a zip file on upload, it may have unzipped it and taken the first file in
it as the dataset.
That's at least the version
Hi all,
I've read the Wiki page on Writing Functional Tests
(http://wiki.g2.bx.psu.edu/Admin/Tools/Writing%20Tests) and I've been looking
through test/base and test/functional and I am left with two questions:
* Is it possible to write a test to validate metadata directly on an
...@bx.psu.edu]
Sent: Monday, October 03, 2011 2:00 PM
To: Paniagua, Eric
Cc: Nate Coraor; galaxy-dev@lists.bx.psu.edu
Subject: Re: [galaxy-dev] (Composite) Dataset Upload not Setting Metadata
Hi Eric,
Can you provide an example of the composite datatype that is experiencing the
metadata problems
/filters/cutWrapper.xml) can be used to set metadata ( e.g. column
assignments ) on tool outputs without using hooks. Please let us know if we can
provide additional information.
Thanks for using Galaxy,
Dan
On Sep 30, 2011, at 1:15 PM, Paniagua, Eric wrote:
Hi Nate,
Thanks for your answers. I
and specifically on the radar of the primary
developer(s) / maintainer(s) of the testing framework?
Thanks again for responding to my email.
Best,
Eric
From: Greg Von Kuster [g...@bx.psu.edu]
Sent: Wednesday, November 30, 2011 9:56 AM
To: Paniagua, Eric
Cc: galaxy
day :)
Best,
Eric
From: Greg Von Kuster [g...@bx.psu.edu]
Sent: Wednesday, November 30, 2011 1:22 PM
To: Paniagua, Eric
Cc: galaxy-dev@lists.bx.psu.edu Dev
Subject: Re: [galaxy-dev] [Internal - Galaxy-dev #2159] (New) 2 questions about
Galaxy's functional
for expressly letting me know; that is much appreciated.
Happy hacking,
Eric
From: Nate Coraor [n...@bx.psu.edu]
Sent: Tuesday, December 06, 2011 1:04 PM
To: Greg Von Kuster
Cc: Paniagua, Eric; galaxy-dev@lists.bx.psu.edu Dev
Subject: Re: [galaxy-dev] [Internal
From: jmchil...@gmail.com [jmchil...@gmail.com] on behalf of John Chilton
[chil...@msi.umn.edu]
Sent: Tuesday, November 05, 2013 11:58 AM
To: Paniagua, Eric
Cc: Galaxy Dev [galaxy-...@bx.psu.edu]
Subject: Re: [galaxy-dev] Managing Data Locality
Hey Eric,
I think what you are purposing would
for your time and assistance.
Best,
Eric
From: jmchil...@gmail.com [jmchil...@gmail.com] on behalf of John Chilton
[chil...@msi.umn.edu]
Sent: Tuesday, November 05, 2013 11:58 AM
To: Paniagua, Eric
Cc: Galaxy Dev [galaxy-...@bx.psu.edu]
Subject: Re: [galaxy-dev
Dear Galaxy Developers,
I've been banging my head against this one for a few days now.
I have two Galaxy instances. One resides on a server called genomics, which
also hosts the corresponding PostgreSQL installation. The second also resides
on genomics, but its database is hosted on
is now completely empty. Have you ever seen this before?
Thanks,
Eric
From: Dannon Baker [dannon.ba...@gmail.com]
Sent: Tuesday, May 27, 2014 7:40 AM
To: Paniagua, Eric
Cc: galaxy-dev@lists.bx.psu.edu
Subject: Re: [galaxy-dev] Problem using Galaxy with a PostgreSQL
in...
From: Dannon Baker [dannon.ba...@gmail.com]
Sent: Tuesday, May 27, 2014 11:43 AM
To: Paniagua, Eric
Cc: galaxy-dev@lists.bx.psu.edu
Subject: Re: [galaxy-dev] Problem using Galaxy with a PostgreSQL database on a
remote host
On Tue, May 27, 2014 at 11:26 AM, Paniagua
that things are working as expected. However,
just the fact that this job is running is a very good sign.
From: Dannon Baker [dannon.ba...@gmail.com]
Sent: Tuesday, May 27, 2014 11:58 AM
To: Paniagua, Eric
Cc: galaxy-dev@lists.bx.psu.edu
Subject: Re: [galaxy-dev
Restarting the Galaxy server in multiple process mode appears to have helped.
The test job is now running.
From: Paniagua, Eric
Sent: Tuesday, May 27, 2014 12:43 PM
To: Dannon Baker
Cc: galaxy-dev@lists.bx.psu.edu
Subject: RE: [galaxy-dev] Problem using Galaxy
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