Hi,
I found that there is a problem when pbs job terminate unexpectedly (job killed
manually / meet walltime),
but galaxy shows the job still working.
And there are some error messages from log file below.
galaxy.jobs.runners.pbs DEBUG 2013-09-10 18:15:57,841 (3811/762.localhost) PBS
job state changed from R to C
galaxy.jobs.runners.pbs ERROR 2013-09-10 18:15:57,841 (3811/762.localhost) PBS
job failed: Unknown error: -10
galaxy.jobs.runners ERROR 2013-09-10 18:15:57,841 (unknown) Unhandled exception
calling fail_job
Traceback (most recent call last):
File
"/mnt/RAID1/mirror/galaxy/galaxy-dist/lib/galaxy/jobs/runners/__init__.py",
line 58, in run_next
method(arg)
File "/mnt/RAID1/mirror/galaxy/galaxy-dist/lib/galaxy/jobs/runners/pbs.py",
line 560, in fail_job
if pbs_job_state.stop_job:
AttributeError: 'AsynchronousJobState' object has no attribute 'stop_job'
It seems that galaxy had received job status from pbs, but pbs.py can't handle
message correctly.
Is there any solution to solve this problem?
Thanks,
Peter
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