Re: [galaxy-dev] cluster path question

2011-02-18 Thread Zhibin Lu
Hi, I had same problem since we do not install software in the system directory. I had to add PATH into ./lib/galaxy/jobs/runners/drmaa.py manually. I do not know if anyone has better solution. Zhibin Lu Bioinformatics Support Ontario Institute for Cancer Research MaRS Centre

[galaxy-dev] Problem to link bam files when uploading through system paths

2011-08-26 Thread Zhibin Lu
: if not (dataset.type in ( 'server_dir', 'path_paste' ) and link_data_only == 'link_to_files') and datatype.dataset_content_needs_grooming( output_path ): * Please advise, -- *Zhibin Lu* Bioinformatics Support *Ontario Institute for Cancer Research* MaRS Centre, South Tower 101 College

Re: [galaxy-dev] Interested in speaking with other institutions deploying Galaxy locally?

2012-04-30 Thread Zhibin Lu
Hi, We have two galaxy instances installed within our institute, and I am very interested in communicating with other galaxy users. Please count me in. Zhibin Lu Bioinformatics Support: Databases Applications Ontario Institute for Cancer Research MaRS Centre, South Tower 101