[galaxy-dev] Edit login page

2012-12-05 Thread Zinonas Antoniou
Hello, I need your help. I need to edit the login page of galaxy and show another way of login in our platform, except of simple login and openid options. I want to have another option for external login. Can you help me please, how to do it? Thank you in advance, Zinonas ___

[galaxy-dev] Upload file from url

2013-01-21 Thread Zinonas Antoniou
Hello, I want to upload a file from a script. A user will select a file, and the full path of the file will be saved, like http://www.example.com/myfile.csv I want to run the upload module of galaxy to save this file from the http path to galaxy. Do you have any suggestions please? Thank yo

[galaxy-dev] Associate a user with a Galaxy user via e-mail like OpenID does

2013-01-23 Thread Zinonas Antoniou
Hello, I have the connection using OAuth and I get the email of a user from other platform. Next, I want to associate this user with a user of Galaxy, like the OpenID does. Can anyone describe me explicitly the procedure should I do? What files should I change? Thank you in advance, Zinon __

[galaxy-dev] How to call a cgi web page in a galaxy folder from a script?

2013-01-27 Thread Zinonas Antoniou
Hello, Now I have a web page (cgi) in a server like www.example.com/myexample.py I want to have the myexample.py file under a galaxy folder. Then, how will I call it inside a script in galaxy? Thank you in advance, Zinon ___ Please keep

Re: [galaxy-dev] How to call a cgi web page in a galaxy folder from a script?

2013-02-01 Thread Zinonas Antoniou
nt > of Galaxy or by making your script a Galaxy tool, but it depends on > what you mean by "how will I call it inside a script in galaxy?". > > -- > James Taylor, Assistant Professor, Biology/CS, Emory University > > > On Sun, Jan 27, 2013 at 2:23 PM, Zinonas Ant

[galaxy-dev] Problem with Upload File tool via url

2013-03-01 Thread Zinonas Antoniou
Dear all, My problem is when I use the /Upload File /tool via URL, I get the message "The uploaded file contains inappropriate HTML content". I tried a lot of file formats. In our development server this tool works fine but in our public server we have this problem. Do you have any solution

Re: [galaxy-dev] Problem with Upload File tool via url

2013-03-01 Thread Zinonas Antoniou
13 at 7:16 AM, Zinonas Antoniou <mailto:z.anton...@gmail.com>> wrote: Dear all, My problem is when I use the /Upload File /tool via URL, I get the message "The uploaded file contains inappropriate HTML content". I tried a lot of file formats. In our developme

[galaxy-dev] Show a cookie value in xml

2013-03-13 Thread Zinonas Antoniou
Dear all, Is there a way to get a value from a cookie and show it in an xml tool file, as a checkbox? I have a value in the cookie, e.g. folderid=2841 and I want to show this value in the xml file. Thank you in advance, Zinon ___ Please

[galaxy-dev] Add a download process to a job handler in history queue

2013-05-17 Thread Zinonas Antoniou
Hello, I developed a script to download file to Galaxy from other platform. If the size of the file is large, the process may take several minutes and I can't to anything else in Galaxy. Is there a way to add the download process in a job handler and add it to history queue? Any help is more