[galaxy-dev] manage data libraries -menu upload files from filesystem paths not present

2011-06-28 Thread colin
Hi, i all, my first post in the mailing list. I started one moth ago galaxy (at the conference) and the tool is really impressive. thx for it. I installed a local version of galaxy (http://ampere.ulb.ac.be), but i am having some trouble when uploading private data on it. Here is the procedure

[galaxy-dev] Fail to start galaxy

2011-06-28 Thread colin
galaxy.jobs INFO 2011-06-28 14:51:49,109 sending stop signal to worker thread galaxy.jobs INFO 2011-06-28 14:51:49,109 job stopper stopped ANY IDEAS to restart galaxy ??? (i have a normal install with no custom stuffs). thank you Colin ___ Please

Re: [galaxy-dev] manage data libraries -menu upload files from filesystem paths not present

2011-06-28 Thread colin molter
with no error? thx again colin 2011/6/28 Hans-Rudolf Hotz h...@fmi.ch Hi Colin In your 'universe_wsgi.ini' file, have you changed the line: library_import_dir = None to the directory with your data? Regards, Hans On 06/28/2011 11:38 AM, colin wrote: Hi, i all, my first post

Re: [galaxy-dev] How to download data from History

2011-07-03 Thread colin molter
. Could I find it somewhere? thx colin 2011/7/1 Jennifer Jackson j...@bx.psu.edu Hello Colin, For #1, we have some wiki help pages that go through the set-up steps for this type of proxy configuration. Please see: https://bitbucket.org/galaxy/**galaxy-central/wiki/Config

[galaxy-dev] From NCBI SRA to UCSC viewer pipeline.

2011-07-07 Thread colin molter
other/related hints. Is there not a simple tutorial/screencast about this process that i guess most of the galaxy users have already did? thx colin -- Colin Molter University of Brussels - InSilico Team - http://insilico.ulb.ac.be/ ___ Please

[galaxy-dev] move dataset from history to server

2011-07-30 Thread colin molter
computer but what I want is just to move the dataset constructed by galaxy to a given repository in my server filesystem. thank you, colin ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions

[galaxy-dev] HOW TO RETRIEVE DATA FROM HISTORY??!!

2011-08-04 Thread colin molter
far, I am obliged to download the file from galaxy to my client machine and then back to the server with huge bam files of 3Gb it is not so convenient!! thank you all colin ___ Please keep all replies on the list by using reply all

Re: [galaxy-dev] HOW TO RETRIEVE DATA FROM HISTORY??!!

2011-09-02 Thread colin molter
On Thu, Aug 4, 2011 at 9:57 PM, colin molter colin.mol...@gmail.com wrote: Is there a way to directly move/copy data from your galaxy history to a given location in the filesystem of the same galaxy server? 2011/9/1 Edward Kirton eskir...@lbl.gov why not create a simple export tool? perhaps