Re-send
From: izmiyati razikin [mailto:izmiy...@novaglobal.com.sg] Sent: Monday, 25 June, 2012 11:01 PM To: 'galaxy-dev@lists.bx.psu.edu' Subject: unable to start galaxy Hello, I'm having problem starting up galaxy. I'm using RHEL 5.3 which comes with python 2.4.3. So I compiled python 2.6.5. I've created a symbolic link and set it in PATH. Yet I'm unable to start galaxy. Thanks in advance for help! Fetch successful. Starting subprocess with file monitor Traceback (most recent call last): File "./scripts/paster.py", line 34, in <module> command.run() File "/home/software/apps/galaxy-dist/eggs/PasteScript-1.7.3-py2.6.egg/paste/scri pt/command.py", line 84, in run invoke(command, command_name, options, args[1:]) File "/home/software/apps/galaxy-dist/eggs/PasteScript-1.7.3-py2.6.egg/paste/scri pt/command.py", line 123, in invoke exit_code = runner.run(args) File "/home/software/apps/galaxy-dist/eggs/PasteScript-1.7.3-py2.6.egg/paste/scri pt/command.py", line 218, in run result = self.command() File "/home/software/apps/galaxy-dist/eggs/PasteScript-1.7.3-py2.6.egg/paste/scri pt/serve.py", line 276, in command relative_to=base, global_conf=vars) File "/home/software/apps/galaxy-dist/eggs/PasteScript-1.7.3-py2.6.egg/paste/scri pt/serve.py", line 313, in loadapp **kw) File "/home/software/apps/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.6.egg/paste/depl oy/loadwsgi.py", line 204, in loadapp return loadobj(APP, uri, name=name, **kw) File "/home/software/apps/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.6.egg/paste/depl oy/loadwsgi.py", line 224, in loadobj global_conf=global_conf) File "/home/software/apps/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.6.egg/paste/depl oy/loadwsgi.py", line 248, in loadcontext global_conf=global_conf) File "/home/software/apps/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.6.egg/paste/depl oy/loadwsgi.py", line 278, in _loadconfig return loader.get_context(object_type, name, global_conf) File "/home/software/apps/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.6.egg/paste/depl oy/loadwsgi.py", line 413, in get_context section) File "/home/software/apps/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.6.egg/paste/depl oy/loadwsgi.py", line 458, in _context_from_explicit value = import_string(found_expr) File "/home/software/apps/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.6.egg/paste/depl oy/loadwsgi.py", line 18, in import_string return pkg_resources.EntryPoint.parse("x="+s).load(False) File "/home/software/apps/galaxy-dist/lib/pkg_resources.py", line 1954, in load entry = __import__(self.module_name, globals(),globals(), ['__name__']) File "/home/software/apps/galaxy-dist/lib/galaxy/web/buildapp.py", line 19, in <module> from galaxy import config, jobs, util, tools File "/home/software/apps/galaxy-dist/lib/galaxy/jobs/__init__.py", line 4, in <module> from galaxy import util, model File "/home/software/apps/galaxy-dist/lib/galaxy/model/__init__.py", line 13, in <module> import galaxy.datatypes.registry File "/home/software/apps/galaxy-dist/lib/galaxy/datatypes/registry.py", line 6, in <module> import data, tabular, interval, images, sequence, qualityscore, genetics, xml, coverage, tracks, chrominfo, binary, assembly, ngsindex, wsf File "/home/software/apps/galaxy-dist/lib/galaxy/datatypes/tabular.py", line 15, in <module> from sniff import * File "/home/software/apps/galaxy-dist/lib/galaxy/datatypes/sniff.py", line 8, in <module> from galaxy.datatypes.binary import unsniffable_binary_formats File "/home/software/apps/galaxy-dist/lib/galaxy/datatypes/binary.py", line 12, in <module> from bx.seq.twobit import TWOBIT_MAGIC_NUMBER, TWOBIT_MAGIC_NUMBER_SWAP, TWOBIT_MAGIC_SIZE File "/home/software/apps/galaxy-dist/eggs/bx_python-0.7.0_494c2d1d68b3_rebuild1- py2.6-linux-x86_64-ucs2.egg/bx/seq/__init__.py", line 7, in <module> from bx.seq.core import * File "/home/software/apps/galaxy-dist/eggs/bx_python-0.7.0_494c2d1d68b3_rebuild1- py2.6-linux-x86_64-ucs2.egg/bx/seq/core.py", line 10, in <module> import fasta, nib, qdna File "/home/software/apps/galaxy-dist/eggs/bx_python-0.7.0_494c2d1d68b3_rebuild1- py2.6-linux-x86_64-ucs2.egg/bx/seq/nib.py", line 28, in <module> import _nib ImportError: /home/software/apps/galaxy-dist/eggs/bx_python-0.7.0_494c2d1d68b3_rebuild1-p y2.6-linux-x86_64-ucs2.egg/bx/seq/_nib.so: undefined symbol: Py_InitModule4_64 [240223 refs] [55760 refs] Rgds, Izy
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