[galaxy-dev] Quick question regarding dist and central

2011-09-19 Thread michael burrell (TSL)
Good afternoon, Just a quick question, is it possible to switch an installed version of galaxy from the central repository to the dist repo? Thanks Michael. ___ Please keep all replies on the list by using "reply all" in your mail client.

[galaxy-dev] database migration issue 64 ->65 - postgresql

2011-06-28 Thread michael burrell (TSL)
Good Afternoon, Firstly am a massive fan of galaxy, really like the things that it can do, but I am a bit stuck updating our instance here and its starting to hold us back. I was hoping someone could offer me some assistance with a database migration (I am pulling my hair out). I am using postg

[galaxy-dev] Error after migrating to latest changeset

2011-07-12 Thread michael burrell (TSL)
Good Morning, I am getting a big problem with our production server when I upgrade to the latest change set (it was quite out of date). I have attached quite a long paster output to try and show whats going on, Our galaxy instance no longer seems to run jobs at all, they are not allocated a jo

[galaxy-dev] Database scheme migration.

2011-07-15 Thread michael burrell (TSL)
Good afternoon I am having some trouble updating our local galaxy, in summary it seems to fail. I have included the errors below and would really appreciate any assistance that could be offered. galaxy@jic55119:~/software/galaxy-ceneral$ sh manage_db.sh upgrade 57 -> 58... Migration script to

[galaxy-dev] Best location for galaxy environmental variables

2011-07-20 Thread michael burrell (TSL)
Good afternoon, More of a general discussion point, where is the best place to put the environmental variable declarations within galaxy. To date I have been placing them as exports in the run.sh, though I can not help but wonder if there is a better place, which is appropriate whatever method