Are you by any chance running an older version of gcj as your java version?
There is a known bug in some of these where they don't correctly configure the
headless environment, even if the correct parameters are passed. This causes
exactly the kind of errors you're seeing.
If this is the case
manually?
Thanks!
On Sat Jun 23 04:20:53 EDT 2012, Simon Andrews
<mailto:galaxy-dev%40lists.bx.psu.edu?Subject=Re%3A%20%5Bgalaxy-dev%5D%20FastQC%20Tool%20Errors&In-Reply-To=%3CD9909700-8628-4478-814C-449803EE45F1%40babraham.ac.uk%3E>
wrote:
Are you by any chance running an older
