Awesome! Thanks for the patch - it has been committed as the following
changeset.
https://bitbucket.org/galaxy/galaxy-central/commits/fcd83883072c64b96ea0f12582fde3d05060b0f4
If anyone else is using something other then LSF, Torque, SLURM,
Condor, or SGE - please be aware of this potential problem and send a
patch for your platform :).
Thanks again,
-John
On Thu, May 15, 2014 at 3:40 PM, Sytchev, Ilya
isytc...@hsph.harvard.edu wrote:
Hi,
I've noticed that $GALAXY_SLOTS that was always set to 1 when using LSF.
It turns out that LSF specifies the number of parallel slots using
$LSB_DJOB_NUMPROC env variable which isn't checked in
lib/galaxy/jobs/runners/util/job_script/CLUSTER_SLOTS_STATEMENT.sh. A
diff that describes the fix is attached.
Ilya
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