Hello Franco,
These details for defining tool dependency installation for tools contained in
tool shed repositories are discussed in the Galaxy tool shed wiki at
http://wiki.g2.bx.psu.edu/ToolShedToolFeatures.
You can also learn a lot by looking at example tool_dependency.xml files in
Hi Bjorn,
I've committed an slightly altered version of your contributed code for
handling tool dependencies that are zip archives in change set
8107:b12140970208, which will be available in the next Galaxy release currently
scheduled for the end of next week. Your code required Python 2.6+,
Hello Bjorn,
From your comments, it seems you are looking for a way to define a tool
dependency that is included in the contents of the repository when it is
installed from the tool shed. If this is the case, then your
tool_dependencies.xml tag set needs to be changed to the following.
Hi,
i'm writing a galaxy wrapper for bismark and trim-galore. Both are plain
perl scripts, that wraps around other dependencies (e.g. Bowtie). The
idea was to include the perl-scripts directly in the galaxy-wrapper and
update the PATH to the REPOSITORY_INSTALL_DIR in the tool_dependency.xml
file.