Hi,
We're using Galaxy Cloud - New Cloud Cluster to create instances of Galaxy for
training on Wednesday 20 November.
When we try to view a bam file using Trackster, we get the following error:
/opt/sge/default/spool/execd/ip-10-32-111-66/job_scripts/14: line 13: bedtools:
command not found
This may be due to an incorrect reference to '/mnt/galaxyTools' in the
galaxy user's .sge_request file.
If you're comfortable with ssh and editing files on the server, you can log
in and edit the file (the path should be /mnt/galaxy instead), and you
should be good to go. Feel free to reply
] ACTION needed: fix error in Cloud Cluster Galaxy
Trackster DATE needed: needed for workshop on Wednesday 20 November
This may be due to an incorrect reference to '/mnt/galaxyTools' in the
galaxy user's .sge_request file.
If you're comfortable with ssh and editing files on the server, you can
@lists.bx.psu.edumailto:galaxy-dev@lists.bx.psu.edu
galaxy-dev@lists.bx.psu.edumailto:galaxy-dev@lists.bx.psu.edu
Subject: Re: [galaxy-dev] ACTION needed: fix error in Cloud Cluster Galaxy
Trackster DATE needed: needed for workshop on Wednesday 20 November
This may be due to an incorrect reference to '/mnt
