Re: [galaxy-dev] BWA missing index on reference genome

2013-07-26 Thread Moritz Juchler
Hey, now I'm stuck with the calculate SA coordinate. Segmenation fault. Google tells me that it could be a problem with -space (I have 4GB left) -the version I use. (I use 0.5.9 and did a succesful alignment with 0.7.5a, but the tool shed says 0.5.9, hence could I just change to the current versio

Re: [galaxy-dev] BWA missing index on reference genome

2013-07-26 Thread Moritz Juchler
I solved it so far :) Thanks for your help. On 26 July 2013 16:15, Jennifer Jackson wrote: > Hi Moritz, > > Pls see below > > On Jul 26, 2013, at 6:37 AM, Moritz Juchler < > juch...@stud.uni-heidelberg.de> wrote: > > Hey, > > 1 I installed Galaxy locally. > 2 I also have BWA installed and then

Re: [galaxy-dev] BWA missing index on reference genome

2013-07-26 Thread Jennifer Jackson
Hi Moritz, Pls see below On Jul 26, 2013, at 6:37 AM, Moritz Juchler wrote: > Hey, > > 1 I installed Galaxy locally. > 2 I also have BWA installed and then used the > 3 shed repository to get the bwa wrapper. > 4 I have the reference genome: >> -rw-r--r-- 1 trr users 10509 2013-07-25 11

[galaxy-dev] BWA missing index on reference genome

2013-07-26 Thread Moritz Juchler
Hey, 1 I installed Galaxy locally. 2 I also have BWA installed and then used the 3 shed repository to get the bwa wrapper. 4 I have the reference genome: > -rw-r--r-- 1 trr users 10509 2013-07-25 11:31 human_g1k_v37.dict > -rw-r--r-- 1 trr users 3153506519 2013-07-25 11:28 human_g1k_v37.fast