Re: [galaxy-dev] Bam upload fails: samtools not found

2014-05-06 Thread Geert Vandeweyer
Peter, After restart of galaxy, the problems was resolved. I've had a similar issue before, where environment settings were not detected after a prolonged uptime of Galaxy. That issue was also resolved after restart. Anyway, problem is fixed for now. thanks for the answers. Geert On 05/05/

Re: [galaxy-dev] Bam upload fails: samtools not found

2014-05-05 Thread Peter Cock
On Mon, May 5, 2014 at 3:30 PM, Geert Vandeweyer wrote: > Hi, > > I'm having issues uploading bam files to our galaxy server. It fails for > both FTP and browser upload. Upload.py is executed on the local job runner. > > The error is: > > Traceback (most recent call last): > File "/galaxy/galaxy

[galaxy-dev] Bam upload fails: samtools not found

2014-05-05 Thread Geert Vandeweyer
Hi, I'm having issues uploading bam files to our galaxy server. It fails for both FTP and browser upload. Upload.py is executed on the local job runner. The error is: Traceback (most recent call last): File "/galaxy/galaxy-dist/tools/data_source/upload.py", line 390, in __main__() Fi