Re: [galaxy-dev] Basic Questions
Set yourself as an administrator, and you can import the files from disk (and link to them if you wish to avoid a copy) as part of a data library. See: https://wiki.galaxyproject.org/Admin/DataLibraries/UploadingLibraryFiles Peter On Tue, Jul 22, 2014 at 3:52 PM, Mark Lindsay wrote: > Apologies if this sounds like a basic question or if I am enquiring of the > incorrect list. > > I have just had a local instance of galaxy installed on my MacPro. > > Could somebody inform me of the best options for loading large BAM files > (5Gb) from the same hard drive into this instance of Galaxy. It states o that > it is not possible to load files > 2Gb and that you must use either a URL or > FTP. > > My scripting knowledge is virtually non-existant….although I have access to > people that do. > > Cheers > > Mark > > > > > ___ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > http://lists.bx.psu.edu/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Re: [galaxy-dev] Basic Questions
Hi Mark, You may want to look into using Data Libraries for large imports like this -- it'll allow you to import the files into Galaxy without making an extra copy. See https://wiki.galaxyproject.org/Admin/DataLibraries/UploadingLibraryFiles for more information -- specifically the 'allow_library_path_paste' portion. -Dannon On Tue, Jul 22, 2014 at 10:52 AM, Mark Lindsay wrote: > Apologies if this sounds like a basic question or if I am enquiring of the > incorrect list. > > I have just had a local instance of galaxy installed on my MacPro. > > Could somebody inform me of the best options for loading large BAM files > (5Gb) from the same hard drive into this instance of Galaxy. It states o > that it is not possible to load files > 2Gb and that you must use either a > URL or FTP. > > My scripting knowledge is virtually non-existant….although I have access > to people that do. > > Cheers > > Mark > > > > > ___ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > http://lists.bx.psu.edu/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ > ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
[galaxy-dev] Basic Questions
Apologies if this sounds like a basic question or if I am enquiring of the incorrect list. I have just had a local instance of galaxy installed on my MacPro. Could somebody inform me of the best options for loading large BAM files (5Gb) from the same hard drive into this instance of Galaxy. It states o that it is not possible to load files > 2Gb and that you must use either a URL or FTP. My scripting knowledge is virtually non-existant….although I have access to people that do. Cheers Mark ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
