I have been having trouble getting cufflinks to run with the -g or -G
parameters via Galaxy. when I select either use reference annotation or use
reference annotation as guide from the pulldown menu, cufflinks runs , but
the -g or -G is not added to the cufflinks command. I think I have
Curt,
You are correct, this is a bug. It was fixed in this changeset:
https://bitbucket.org/galaxy/galaxy-central/changeset/ff7c8c0bef60
We'll be updating galaxy-dist in the next week and this change will be
available then.
Thanks,
J.
On Oct 5, 2011, at 5:54 PM, Curt Palm wrote:
I have
