I'd like to get a better understanding of the point of the database/build
attribute, and pose the question of when is the appropriate time to have it
set?
In our case at the Jackson Laboratory, the most common build is NCBI37/MM9.
However, the feeling of many folks here, is that this should not
I'll just chime in quickly with an agreement that FASTQ files should not have
dbkeys set. They don't yet belong to a build/reference genome version. Some
tools/workflows may currently require a FASTQ file to have the dbkey set, but
this should be considered a work-around for a defect in a tool
Dave,
The fact that the Tophat wrapper was not setting the genome based on
the alignment genome was actually a bug, but I just fixed it in
changeset 5570:0c1251f25c6b.
Let us know if you have further questions.
Regards,
Kelly
On May 17, 2011, at 10:57 AM, Dave Walton wrote:
I'd like to
