Re: [galaxy-dev] Dataset's extra files

2014-03-14 Thread John Chilton
The directory can be obtained using $galaxyData.extra_files_path (be sure to check it exists before zipping it up). I would discourage re-using Galaxy components directly from inside of a tool or tool wrapper - but if you want to reference that code it is actually inside of the datatypes module -

[galaxy-dev] Dataset's extra files

2014-03-11 Thread Charles Girardot
Hi all, We have a local tool which role is to transfer (ie copy) a dataset file to a directory on our NFS. This is extremely convenient as it can be included within workflows and therefore save the time of clicking download button (we also have configurable renaming/compression as part of