[galaxy-dev] Defining $GALAXY_CPUS for use in tool wrappers

2013-07-30 Thread Peter Cock
Hello all, Re: http://lists.bx.psu.edu/pipermail/galaxy-dev/2012-June/010153.html http://lists.bx.psu.edu/pipermail/galaxy-dev/2012-October/011557.html Something I raised during the GCC2013, and we talked about via Twitter as well was a Galaxy environment variable for use within Tool Wrappers

Re: [galaxy-dev] Defining $GALAXY_CPUS for use in tool wrappers

2013-07-30 Thread James Taylor
I would actually prefer we use $GALAXY_SLOTS. -- James Taylor, Assistant Professor, Biology/CS, Emory University On Tue, Jul 30, 2013 at 11:18 AM, Peter Cock p.j.a.c...@googlemail.com wrote: Hello all, Re: http://lists.bx.psu.edu/pipermail/galaxy-dev/2012-June/010153.html

Re: [galaxy-dev] Defining $GALAXY_CPUS for use in tool wrappers

2013-07-30 Thread Peter Cock
On Tue, Jul 30, 2013 at 4:39 PM, James Taylor ja...@jamestaylor.org wrote: I would actually prefer we use $GALAXY_SLOTS. I like that too, CPUs is a bit of a fuzzy term with multiple cores, and SLOTS has familiarity from the SGE terminology as well. Peter

Re: [galaxy-dev] Defining $GALAXY_CPUS for use in tool wrappers

2013-07-30 Thread Nate Coraor
On Jul 30, 2013, at 11:40 AM, Peter Cock wrote: On Tue, Jul 30, 2013 at 4:39 PM, James Taylor ja...@jamestaylor.org wrote: I would actually prefer we use $GALAXY_SLOTS. I like that too, CPUs is a bit of a fuzzy term with multiple cores, and SLOTS has familiarity from the SGE terminology

Re: [galaxy-dev] Defining $GALAXY_CPUS for use in tool wrappers

2013-07-30 Thread Peter Cock
On Tue, Jul 30, 2013 at 4:44 PM, Nate Coraor n...@bx.psu.edu wrote: On Jul 30, 2013, at 11:40 AM, Peter Cock wrote: On Tue, Jul 30, 2013 at 4:39 PM, James Taylor ja...@jamestaylor.org wrote: I would actually prefer we use $GALAXY_SLOTS. I like that too, CPUs is a bit of a fuzzy term with

Re: [galaxy-dev] Defining $GALAXY_CPUS for use in tool wrappers

2013-07-30 Thread Nate Coraor
On Jul 30, 2013, at 11:47 AM, Peter Cock wrote: On Tue, Jul 30, 2013 at 4:44 PM, Nate Coraor n...@bx.psu.edu wrote: On Jul 30, 2013, at 11:40 AM, Peter Cock wrote: On Tue, Jul 30, 2013 at 4:39 PM, James Taylor ja...@jamestaylor.org wrote: I would actually prefer we use $GALAXY_SLOTS. I