On Thu, May 3, 2012 at 12:20 AM, Cory Spencer cspen...@sprocket.org wrote:
Hi all -
I've been trying to get the repeat.../repeat tag working with a min
attribute for
some time now, though without any success. It works in other tools
distributed
with Galaxy, but when I attempt to use it in one of our custom tools, it dies
with
a AttributeError: 'ExpressionContext' object has no attribute 'keys'
exception.
Can anybody offer any insight?
The full traceback is:
⇝ AttributeError: 'ExpressionContext' object has no attribute 'keys'
URL: http://localhost:8080/tool_runner?tool_id=scde-list-compare
Module weberror.evalexception.middleware:364 in respond view
app_iter = self.application(environ, detect_start_response)
Module paste.debug.prints:98 in __call__ view
environ, self.app)
Module paste.wsgilib:539 in intercept_output view
app_iter = application(environ, replacement_start_response)
Module paste.recursive:80 in __call__ view
return self.application(environ, start_response)
Module paste.httpexceptions:632 in __call__ view
return self.application(environ, start_response)
Module galaxy.web.framework.base:160 in __call__ view
body = method( trans, **kwargs )
Module galaxy.web.controllers.tool_runner:68 in index view
template, vars = tool.handle_input( trans, params.__dict__ )
Module galaxy.tools:1320 in handle_input view
state = self.new_state( trans )
Module galaxy.tools:1248 in new_state view
self.fill_in_new_state( trans, inputs, state.inputs )
Module galaxy.tools:1257 in fill_in_new_state view
state[ input.name ] = input.get_initial_value( trans, context )
Module galaxy.tools.parameters.grouping:100 in get_initial_value
view
rval_dict[ input.name ] = input.get_initial_value( trans, context )
Module galaxy.tools.parameters.basic:1016 in get_initial_value
view
return SelectToolParameter.get_initial_value( self, trans, context )
Module galaxy.tools.parameters.basic:785 in get_initial_value
view
if self.need_late_validation( trans, context ):
Module galaxy.tools.parameters.basic:1022 in need_late_validation
view
if super( ColumnListParameter, self ).need_late_validation( trans,
context ):
Module galaxy.tools.parameters.basic:766 in need_late_validation
view
for layer in context.itervalues():
Module UserDict:116 in itervalues view
for _, v in self.iteritems():
Module UserDict:109 in iteritems view
for k in self:
Module UserDict:96 in __iter__ view
for k in self.keys():
AttributeError: 'ExpressionContext' object has no attribute 'keys'
Hi Cory,
Do you remember if you could solve this? I've used repeat a few times
even with a min value, but just hit the same issue as you:
⇝ AttributeError: 'ExpressionContext' object has no attribute 'keys'
URL: http://localhost/galaxy-dev/tool_runner?tool_id=seq_filter_by_id
Module weberror.evalexception.middleware:364 in respond view
app_iter = self.application(environ, detect_start_response)
Module paste.recursive:84 in __call__ view
return self.application(environ, start_response)
Module paste.httpexceptions:633 in __call__ view
return self.application(environ, start_response)
Module galaxy.web.framework.base:132 in __call__ view
return self.handle_request( environ, start_response )
Module galaxy.web.framework.base:190 in handle_request view
body = method( trans, **kwargs )
Module galaxy.webapps.galaxy.controllers.tool_runner:82 in index view
template, vars = tool.handle_input( trans, params.__dict__ )
Module galaxy.tools:1882 in handle_input view
state = self.new_state( trans )
Module galaxy.tools:1810 in new_state view
self.fill_in_new_state( trans, inputs, state.inputs )
Module galaxy.tools:1819 in fill_in_new_state view
state[ input.name ] = input.get_initial_value( trans, context )
Module galaxy.tools.parameters.grouping:104 in get_initial_value view
rval_dict[ input.name ] = input.get_initial_value( trans, context )
Module galaxy.tools.parameters.basic:1042 in get_initial_value view
return SelectToolParameter.get_initial_value( self, trans, context )
Module galaxy.tools.parameters.basic:808 in get_initial_value view
if self.need_late_validation( trans, context ):
Module galaxy.tools.parameters.basic:1048 in need_late_validation view
if super( ColumnListParameter, self ).need_late_validation( trans, context
):
Module galaxy.tools.parameters.basic:789 in need_late_validation view
for layer in context.itervalues():
Module UserDict:116 in itervalues view
for _, v in self.iteritems():
Module UserDict:109
