Re: [galaxy-dev] Disk space issue - again

2014-09-30 Thread Dannon Baker
Hi Viren,

There's a script shipped with galaxy that you can use
'./scripts/set_user_disk_usage.py' to force recalculation of a user's disk
usage.

-Dannon

On Tue, Sep 30, 2014 at 7:44 PM, Patel, Viren  wrote:

> Hello. I have a Galaxy user whose disk usage remains at 91% even after
> deleting and purging all histories and datasets (The initial disk usage
> was 99%). I have searched the mailing list (e.g.
> http://dev.list.galaxyproject.org/disk-space-usage-td4660164.html) and
> wiki posts and followed all the steps, including purging hidden data. I
> have the cleanup scripts running once a day via cron:
>
> 01 01 * * * cd ~/galaxy-dist && python
> scripts/cleanup_datasets/cleanup_datasets.py universe_wsgi.ini -r -d 60 -1
> 11 01 * * * cd ~/galaxy-dist && python
> scripts/cleanup_datasets/cleanup_datasets.py universe_wsgi.ini -r -d 60 -2
> 21 01 * * * cd ~/galaxy-dist && python
> scripts/cleanup_datasets/cleanup_datasets.py universe_wsgi.ini -r -d 60 -4
> 31 01 * * * cd ~/galaxy-dist && python
> scripts/cleanup_datasets/cleanup_datasets.py universe_wsgi.ini -r -d 60 -5
> 41 01 * * * cd ~/galaxy-dist && python
> scripts/cleanup_datasets/cleanup_datasets.py universe_wsgi.ini -r -d 60 -3
> 51 01 * * * cd ~/galaxy-dist && python
> scripts/cleanup_datasets/cleanup_datasets.py universe_wsgi.ini -r -d 60 -6
> 01 02 * * * find ~/tmp -mtime +60 -delete
>
>
> I have manually run the above commands with -d 1 to delete anything older
> than 1 day and I have restarted the Galaxy service. However the user¹s
> disk usage remains at 91%. I am at a loss of what to try next. Any
> suggestions or ideas of what the issue could be, or what I need to do
> additionally? I am running the April 2014 distribution of Galaxy. Thanks.
> Viren
>
>
>
>
> 
>
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[galaxy-dev] Disk space issue - again

2014-09-30 Thread Patel, Viren
Hello. I have a Galaxy user whose disk usage remains at 91% even after
deleting and purging all histories and datasets (The initial disk usage
was 99%). I have searched the mailing list (e.g.
http://dev.list.galaxyproject.org/disk-space-usage-td4660164.html) and
wiki posts and followed all the steps, including purging hidden data. I
have the cleanup scripts running once a day via cron:

01 01 * * * cd ~/galaxy-dist && python
scripts/cleanup_datasets/cleanup_datasets.py universe_wsgi.ini -r -d 60 -1
11 01 * * * cd ~/galaxy-dist && python
scripts/cleanup_datasets/cleanup_datasets.py universe_wsgi.ini -r -d 60 -2
21 01 * * * cd ~/galaxy-dist && python
scripts/cleanup_datasets/cleanup_datasets.py universe_wsgi.ini -r -d 60 -4
31 01 * * * cd ~/galaxy-dist && python
scripts/cleanup_datasets/cleanup_datasets.py universe_wsgi.ini -r -d 60 -5
41 01 * * * cd ~/galaxy-dist && python
scripts/cleanup_datasets/cleanup_datasets.py universe_wsgi.ini -r -d 60 -3
51 01 * * * cd ~/galaxy-dist && python
scripts/cleanup_datasets/cleanup_datasets.py universe_wsgi.ini -r -d 60 -6
01 02 * * * find ~/tmp -mtime +60 -delete


I have manually run the above commands with -d 1 to delete anything older
than 1 day and I have restarted the Galaxy service. However the user¹s
disk usage remains at 91%. I am at a loss of what to try next. Any
suggestions or ideas of what the issue could be, or what I need to do
additionally? I am running the April 2014 distribution of Galaxy. Thanks.
Viren






This e-mail message (including any attachments) is for the sole use of
the intended recipient(s) and may contain confidential and privileged
information. If the reader of this message is not the intended
recipient, you are hereby notified that any dissemination, distribution
or copying of this message (including any attachments) is strictly
prohibited.

If you have received this message in error, please contact
the sender by reply e-mail message and destroy all copies of the
original message (including attachments).

___
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/