Hello, I am trying to use Galaxy to intersect different sets of genomic intervals. When I do this, I get the following error. Skipped 10 invalid lines of 1st dataset, 1st line #20: "chr10 131694149 131694408", problem: 536870912 is larger than the size of this BitSet (536870912).
I have tried using different sets of intervals, in both interval and BED format and used the two queries in different order in the intersect tool, but I cannot seem to resolve the problem. The error message will differ in the number of "invalid lines" skipped, but when I check the intervals they appear to be alright. Could anyone help? Thank you very much, Chamith Fonseka ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
