Re: [galaxy-dev] Error viewing BAM files in IGV

2012-02-01 Thread Nate Coraor
On Dec 19, 2011, at 12:24 PM, Jim Johnson wrote: Hi, I'm seeing the same behavior. Galaxy is returning a web page rather than the requested .bai index file for the BAM file. In class WebApplication ( lib/galaxy/web/framework/base.py ) in __call__( self, environ, start_response )

Re: [galaxy-dev] Error viewing BAM files in IGV

2012-02-01 Thread Jim Johnson
Nate, John Chilton got that fixed for us. As you suggest, it involved a fix in our proxy configuration. JJ On 2/1/12 9:01 AM, Nate Coraor wrote: On Dec 19, 2011, at 12:24 PM, Jim Johnson wrote: Hi, I'm seeing the same behavior. Galaxy is returning a web page rather than the requested

Re: [galaxy-dev] Error viewing BAM files in IGV

2012-02-01 Thread Nate Coraor
On Feb 1, 2012, at 10:05 AM, Jim Johnson wrote: Nate, John Chilton got that fixed for us. As you suggest, it involved a fix in our proxy configuration. JJ Great, thanks! --nate On 2/1/12 9:01 AM, Nate Coraor wrote: On Dec 19, 2011, at 12:24 PM, Jim Johnson wrote: Hi, I'm

Re: [galaxy-dev] Error viewing BAM files in IGV

2012-02-01 Thread Nate Coraor
On Jan 17, 2012, at 10:50 AM, Alexander Graf wrote: Hi Nate, sorry for my late reply, but I was on holiday last weeks. I have looked in my apache error.log and access.log resulting into no new insights - no output is given there. So I gave nginx a try, getting the same error as before. I

Re: [galaxy-dev] Error viewing BAM files in IGV

2011-12-19 Thread Jim Johnson
Hi, I'm seeing the same behavior. Galaxy is returning a web page rather than the requested .bai index file for the BAM file. In class WebApplication ( lib/galaxy/web/framework/base.py ) in __call__( self, environ, start_response ) line 133 # Setup the transaction trans =

[galaxy-dev] Error viewing BAM files in IGV

2011-12-09 Thread Alexander Graf
Hello, I have recently updated our Galaxy dist and I'm running into problems viewing BAM files in IGV (v2.0.22), saying: Invalid GZIP header. I have configured the Apache as explained in the Wiki using this *http.conf* :