Re: [galaxy-dev] Error when searching for tools in local instance.
Hi Sam, No it did not fix the issue. When I checked we were in fact in the stable branch. I am sorry for my delayed response, --Ricardo Perez - Original Message - From: "sam guerler" To: "Ricardo Perez" Cc: "Galaxy-dev Galaxy-dev" Sent: Friday, January 24, 2014 5:21:56 PM Subject: Re: [galaxy-dev] Error when searching for tools in local instance. Hey Ricardo, Did that fix your issue? Does the problem occur in one of the branches? If yes, please let me know which one. Thanks, Sam On Wed, Jan 22, 2014 at 10:51 AM, Perez, Ricardo < ricky_...@neo.tamu.edu > wrote: Hello Sam, I believe we are using the default branch. I will try to change branches now. Thank you, --Ricardo Perez - Original Message - From: "sam guerler" < aysam.guer...@gmail.com > To: "Ricardo Perez" < ricky_...@neo.tamu.edu > Cc: "Galaxy-dev Galaxy-dev" < galaxy-dev@lists.bx.psu.edu > Sent: Tuesday, January 21, 2014 3:19:07 PM Subject: Re: [galaxy-dev] Error when searching for tools in local instance. Hi Ricardo, Are you using the newest version from the stable branch or from default? Thanks, Sam On Tue, Jan 21, 2014 at 3:53 PM, Perez, Ricardo < ricky_...@neo.tamu.edu > wrote: Dear All, When I go to my Galaxy Distibution I go the following place: Admin -> Manage installed tool shed repositories When I search for a tool in here with the provided search bar, I get the following (I believe this is a bug): URL: https://galaxy.tamu.edu/admin_toolshed/browse_repositories?async=false&sort=name&page=1&show_item_checkboxes=false&f-deleted=False&f-free-text-search=search File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/middleware/error.py', line 149 in __call__ app_iter = self.application(environ, sr_checker) File '/usr/local/galaxy/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/recursive.py', line 84 in __call__ return self.application(environ, start_response) File '/usr/local/galaxy/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/httpexceptions.py', line 633 in __call__ return self.application(environ, start_response) File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/base.py', line 132 in __call__ return self.handle_request( environ, start_response ) File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/base.py', line 190 in handle_request body = method( trans, **kwargs ) File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/__init__.py', line 229 in decorator return func( self, trans, *args, **kwargs ) File '/usr/local/galaxy/galaxy-dist/lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py', line 153 in browse_repositories return self.installed_repository_grid( trans, **kwd ) File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/helpers/grids.py', line 138 in __call__ query = column.filter( trans, trans.user, query, column_filter ) File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/helpers/grids.py', line 616 in filter clause_list.append( column.get_filter( trans, user, column_filter ) ) File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/helpers/grids.py', line 400 in get_filter return self.get_single_filter( user, column_filter ) File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/helpers/grids.py', line 413 in get_single_filter if self.key.find( '.' ) > -1: AttributeError: 'NoneType' object has no attribute 'find' How would I go to fix this. Thank you, --Ricardo Perez ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/ ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Re: [galaxy-dev] Error when searching for tools in local instance.
Hey Ricardo, Did that fix your issue? Does the problem occur in one of the branches? If yes, please let me know which one. Thanks, Sam On Wed, Jan 22, 2014 at 10:51 AM, Perez, Ricardo wrote: > Hello Sam, > > I believe we are using the default branch. > I will try to change branches now. > > Thank you, > --Ricardo Perez > > - Original Message - > From: "sam guerler" > To: "Ricardo Perez" > Cc: "Galaxy-dev Galaxy-dev" > Sent: Tuesday, January 21, 2014 3:19:07 PM > Subject: Re: [galaxy-dev] Error when searching for tools in local instance. > > > Hi Ricardo, > > > Are you using the newest version from the stable branch or from default? > > > Thanks, > Sam > > > > On Tue, Jan 21, 2014 at 3:53 PM, Perez, Ricardo < ricky_...@neo.tamu.edu> > wrote: > > > Dear All, > > When I go to my Galaxy Distibution I go the following place: > Admin -> Manage installed tool shed repositories > > When I search for a tool in here with the provided search bar, I get the > following (I believe this is a bug): > > URL: > https://galaxy.tamu.edu/admin_toolshed/browse_repositories?async=false&sort=name&page=1&show_item_checkboxes=false&f-deleted=False&f-free-text-search=search > File > '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/middleware/error.py', > line 149 in __call__ > app_iter = self.application(environ, sr_checker) > File > '/usr/local/galaxy/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/recursive.py', > line 84 in __call__ > return self.application(environ, start_response) > File > '/usr/local/galaxy/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/httpexceptions.py', > line 633 in __call__ > return self.application(environ, start_response) > File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/base.py', > line 132 in __call__ > return self.handle_request( environ, start_response ) > File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/base.py', > line 190 in handle_request > body = method( trans, **kwargs ) > File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/__init__.py', > line 229 in decorator > return func( self, trans, *args, **kwargs ) > File > '/usr/local/galaxy/galaxy-dist/lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py', > line 153 in browse_repositories > return self.installed_repository_grid( trans, **kwd ) > File > '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/helpers/grids.py', > line 138 in __call__ > query = column.filter( trans, trans.user, query, column_filter ) > File > '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/helpers/grids.py', > line 616 in filter > clause_list.append( column.get_filter( trans, user, column_filter ) ) > File > '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/helpers/grids.py', > line 400 in get_filter > return self.get_single_filter( user, column_filter ) > File > '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/helpers/grids.py', > line 413 in get_single_filter > if self.key.find( '.' ) > -1: > AttributeError: 'NoneType' object has no attribute 'find' > > How would I go to fix this. > > Thank you, > --Ricardo Perez > ___ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > http://lists.bx.psu.edu/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ > > ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Re: [galaxy-dev] Error when searching for tools in local instance.
Hello Sam, I believe we are using the default branch. I will try to change branches now. Thank you, --Ricardo Perez - Original Message - From: "sam guerler" To: "Ricardo Perez" Cc: "Galaxy-dev Galaxy-dev" Sent: Tuesday, January 21, 2014 3:19:07 PM Subject: Re: [galaxy-dev] Error when searching for tools in local instance. Hi Ricardo, Are you using the newest version from the stable branch or from default? Thanks, Sam On Tue, Jan 21, 2014 at 3:53 PM, Perez, Ricardo < ricky_...@neo.tamu.edu > wrote: Dear All, When I go to my Galaxy Distibution I go the following place: Admin -> Manage installed tool shed repositories When I search for a tool in here with the provided search bar, I get the following (I believe this is a bug): URL: https://galaxy.tamu.edu/admin_toolshed/browse_repositories?async=false&sort=name&page=1&show_item_checkboxes=false&f-deleted=False&f-free-text-search=search File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/middleware/error.py', line 149 in __call__ app_iter = self.application(environ, sr_checker) File '/usr/local/galaxy/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/recursive.py', line 84 in __call__ return self.application(environ, start_response) File '/usr/local/galaxy/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/httpexceptions.py', line 633 in __call__ return self.application(environ, start_response) File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/base.py', line 132 in __call__ return self.handle_request( environ, start_response ) File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/base.py', line 190 in handle_request body = method( trans, **kwargs ) File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/__init__.py', line 229 in decorator return func( self, trans, *args, **kwargs ) File '/usr/local/galaxy/galaxy-dist/lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py', line 153 in browse_repositories return self.installed_repository_grid( trans, **kwd ) File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/helpers/grids.py', line 138 in __call__ query = column.filter( trans, trans.user, query, column_filter ) File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/helpers/grids.py', line 616 in filter clause_list.append( column.get_filter( trans, user, column_filter ) ) File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/helpers/grids.py', line 400 in get_filter return self.get_single_filter( user, column_filter ) File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/helpers/grids.py', line 413 in get_single_filter if self.key.find( '.' ) > -1: AttributeError: 'NoneType' object has no attribute 'find' How would I go to fix this. Thank you, --Ricardo Perez ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/ ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Re: [galaxy-dev] Error when searching for tools in local instance.
Hi Ricardo, Are you using the newest version from the stable branch or from default? Thanks, Sam On Tue, Jan 21, 2014 at 3:53 PM, Perez, Ricardo wrote: > Dear All, > > When I go to my Galaxy Distibution I go the following place: > Admin -> Manage installed tool shed repositories > > When I search for a tool in here with the provided search bar, I get the > following (I believe this is a bug): > > URL: > https://galaxy.tamu.edu/admin_toolshed/browse_repositories?async=false&sort=name&page=1&show_item_checkboxes=false&f-deleted=False&f-free-text-search=search > File > '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/middleware/error.py', > line 149 in __call__ > app_iter = self.application(environ, sr_checker) > File > '/usr/local/galaxy/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/recursive.py', > line 84 in __call__ > return self.application(environ, start_response) > File > '/usr/local/galaxy/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/httpexceptions.py', > line 633 in __call__ > return self.application(environ, start_response) > File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/base.py', > line 132 in __call__ > return self.handle_request( environ, start_response ) > File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/base.py', > line 190 in handle_request > body = method( trans, **kwargs ) > File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/__init__.py', > line 229 in decorator > return func( self, trans, *args, **kwargs ) > File > '/usr/local/galaxy/galaxy-dist/lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py', > line 153 in browse_repositories > return self.installed_repository_grid( trans, **kwd ) > File > '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/helpers/grids.py', > line 138 in __call__ > query = column.filter( trans, trans.user, query, column_filter ) > File > '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/helpers/grids.py', > line 616 in filter > clause_list.append( column.get_filter( trans, user, column_filter ) ) > File > '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/helpers/grids.py', > line 400 in get_filter > return self.get_single_filter( user, column_filter ) > File > '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/helpers/grids.py', > line 413 in get_single_filter > if self.key.find( '.' ) > -1: > AttributeError: 'NoneType' object has no attribute 'find' > > How would I go to fix this. > > Thank you, > --Ricardo Perez > ___ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > http://lists.bx.psu.edu/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ > ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
[galaxy-dev] Error when searching for tools in local instance.
Dear All, When I go to my Galaxy Distibution I go the following place: Admin -> Manage installed tool shed repositories When I search for a tool in here with the provided search bar, I get the following (I believe this is a bug): URL: https://galaxy.tamu.edu/admin_toolshed/browse_repositories?async=false&sort=name&page=1&show_item_checkboxes=false&f-deleted=False&f-free-text-search=search File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/middleware/error.py', line 149 in __call__ app_iter = self.application(environ, sr_checker) File '/usr/local/galaxy/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/recursive.py', line 84 in __call__ return self.application(environ, start_response) File '/usr/local/galaxy/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/httpexceptions.py', line 633 in __call__ return self.application(environ, start_response) File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/base.py', line 132 in __call__ return self.handle_request( environ, start_response ) File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/base.py', line 190 in handle_request body = method( trans, **kwargs ) File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/__init__.py', line 229 in decorator return func( self, trans, *args, **kwargs ) File '/usr/local/galaxy/galaxy-dist/lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py', line 153 in browse_repositories return self.installed_repository_grid( trans, **kwd ) File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/helpers/grids.py', line 138 in __call__ query = column.filter( trans, trans.user, query, column_filter ) File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/helpers/grids.py', line 616 in filter clause_list.append( column.get_filter( trans, user, column_filter ) ) File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/helpers/grids.py', line 400 in get_filter return self.get_single_filter( user, column_filter ) File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/helpers/grids.py', line 413 in get_single_filter if self.key.find( '.' ) > -1: AttributeError: 'NoneType' object has no attribute 'find' How would I go to fix this. Thank you, --Ricardo Perez ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
