Hey Greet and Bjoern,
Sorry for the troubles with dependencies during the automated installation
procedure!
I will add tool dependency file, when I get some time during this weekend
:)
Vipin | Rätsch Lab
On Tue, Jul 29, 2014 at 10:06 AM, Björn Grüning
wrote:
> Hi Geert and Vipin,
>
> I might
Hi Geert and Vipin,
I might also consider the DESeq package and the wrappers from
galaxytools if you plan to update your wrappers.
https://github.com/bgruening/galaxytools/tree/master/orphan_tool_dependencies/package_deseq2_1_2_10
@Geert: impressive documentation! Thanks a lot for sharing!
Bj
I know this is a very old entry to the mailing list, but I thought this
might be useful for some people.
Recently, I set up DESeq-hts and its siblings on our galaxy instance. To
succeed, I performed the steps below.
@vipin: would you consider revising the tool_dependencies.xml for these
tool
Hi Philipe
Look into the bin/deseq_config.sh and see if the path to octave and
samtools have been set correctly.
I'm having problem running DESeq too. I go past this point by I get
get_reads.mex
error: path/shed_tools/
toolshed.g2.bx.psu.edu/repos/vipints/deseq_hts/2b3bb3348076/deseq_hts/deseq-
Hi,
I have tried to follow instructions provided with this installation
a) Run ./setup_deseq-hts.sh and setup paths and configuration options for
DESeq-hts.
I successfully ran the setup scrip but is there other path and conf that
need to be done apart from those done by this script ?
b) Inside
