Re: [galaxy-dev] Executing a binary file from Galaxy job

2011-12-19 Thread Nate Coraor
On Dec 14, 2011, at 9:45 PM, Roger Ngo wrote: > Hi, I have a perl script which executes a Java JAR file located in > tool-data/shared/jars/ and this Jar file at one point executes 2 other binary > programs during its job process. These 2 programs are located in the same > directory as the JAR f

[galaxy-dev] Executing a binary file from Galaxy job

2011-12-14 Thread Roger Ngo
Hi, I have a perl script which executes a Java JAR file located in tool-data/shared/jars/ and this Jar file at one point executes 2 other binary programs during its job process. These 2 programs are located in the same directory as the JAR file. I am getting errors in Galaxy saying "No such file o