Re: [galaxy-dev] Fwd: Failed runtime validation of To

2013-06-11 Thread James Taylor
This message should be associated with a particular step in the
workflow. If you can tell us what tool it is that will help to
diagnose. The message means that a parameter that could not be checked
until the workflow ran had an invalid value.

--
James Taylor, Assistant Professor, Biology/CS, Emory University


On Mon, Jun 10, 2013 at 5:19 PM, Sameer Dixit samwise.tec...@gmail.com wrote:


 Hey all,

 I've been trying to run a workflow on Galaxy, which basically attempts to
 establish a correlation between the Chip-Chip, Polymerase binding and Dnase
 Hypersensitivity data. The input would be these 3 files, I am initially
 performing a liftover on the Chip-Chip data to convert from hg18 to hg19 and
 then using the output to establish the correlation.

 The following error keeps coming up

 'Failed runtime validation of To (An invalid option was selected, please
 verify)'



 Can anyone please tell me what this might mean?

 This came up while attempting to run the following tool

 Traceback (most recent call last):
   File
 /galaxy/home/g2main/galaxy_main/lib/galaxy/jobs/runners/__init__.py, line
 121, in prepare_job
 job_wrapper.prepare()
   File /galaxy/home/g2main/galaxy_main/lib/galaxy/jobs/__init__.py, line
 656, in prepare
 self.tool.handle_unvalidated_param_values( incoming, self.app )
   File /galaxy/home/g2main/galaxy_main/lib/galaxy/tools/__init__.py, line
 2343, in handle_unvalidated_param_values
 self.handle_unvalidated_param_values_helper( self.inputs, input_values,
 app )
   File /galaxy/home/g2main/galaxy_main/lib/galaxy/tools/__init__.py, line
 2382, in handle_unvalidated_param_values_helper
 raise LateValidationError( message )
 LateValidationError

 Any assistance would be highly appreciated!!

 Thanks

 -Sameer



 ___
 Please keep all replies on the list by using reply all
 in your mail client.  To manage your subscriptions to this
 and other Galaxy lists, please use the interface at:
   http://lists.bx.psu.edu/

 To search Galaxy mailing lists use the unified search at:
   http://galaxyproject.org/search/mailinglists/
___
Please keep all replies on the list by using reply all
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/


[galaxy-dev] Fwd: Failed runtime validation of To

2013-06-10 Thread Sameer Dixit
Hey all,

I've been trying to run a workflow on Galaxy, which basically attempts to
establish a correlation between the Chip-Chip, Polymerase binding and Dnase
Hypersensitivity data. The input would be these 3 files, I am initially
performing a liftover on the Chip-Chip data to convert from hg18 to hg19
and then using the output to establish the correlation.

The following error keeps coming up

'Failed runtime validation of To (An invalid option was selected,
please verify)'

Can anyone please tell me what this might mean?

This came up while attempting to run the following tool

Traceback (most recent call last):
  File /galaxy/home/g2main/galaxy_main/lib/galaxy/jobs/runners/__init__.py,
line 121, in prepare_job
job_wrapper.prepare()
  File /galaxy/home/g2main/galaxy_main/lib/galaxy/jobs/__init__.py,
line 656, in prepare
self.tool.handle_unvalidated_param_values( incoming, self.app )
  File /galaxy/home/g2main/galaxy_main/lib/galaxy/tools/__init__.py,
line 2343, in handle_unvalidated_param_values
self.handle_unvalidated_param_values_helper( self.inputs,
input_values, app )
  File /galaxy/home/g2main/galaxy_main/lib/galaxy/tools/__init__.py,
line 2382, in handle_unvalidated_param_values_helper
raise LateValidationError( message )
LateValidationError

Any assistance would be highly appreciated!!

Thanks

-Sameer
___
Please keep all replies on the list by using reply all
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/