Hi Evan,
Assuming you are talking about an input file from:
param type=data .../
I don't think you can set a default - the possible files will
depend on the current history, so could be zero, one or
many files. Also, how would how specify a specific file?
They would have Galaxy assigned *.dat filenames on disk,
while the names could have been set to anything by the user.
My guess is you may be better off defining a new datatype
(a subclass of txt perhaps?).
Regards,
Peter
On Wed, Jun 18, 2014 at 10:28 PM, Evan Bollig boll0...@umn.edu wrote:
To clarify, I want to specify the default selected file name for an
Input Dataset block in the workflow, but I'd like to keep the option
open to select other input names with the same type.
When I specify a file type for a tool's input, it is not enough. The
input dataset can end up finding dozens of files that are txt for
example. I want to know all possible tool_state annotations for Input
Dataset (tool_id: null). Where would I find this?
Cheers,
-Evan Bollig
Research Associate | Application Developer | User Support Consultant
Minnesota Supercomputing Institute
599 Walter Library
612 624 1447
e...@msi.umn.edu
boll0...@umn.edu
-- Forwarded message --
From: Evan Bollig boll0...@umn.edu
Date: Wed, Jun 18, 2014 at 11:19 AM
Subject: specifying default file by name in workflows
To: galaxy-...@bx.psu.edu galaxy-...@bx.psu.edu
I don't know all the subtleties of the galaxy workflow syntax. My goal
is to specify the default input file names for a number of tools in a
workflow. Is this possible, or am I limited to only providing the file
type or extension?
If possible, can you provide an example?
Thanks,
-Evan Bollig
Research Associate | Application Developer | User Support Consultant
Minnesota Supercomputing Institute
599 Walter Library
612 624 1447
e...@msi.umn.edu
boll0...@umn.edu
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