Hi Carlos,
Are you using a version of GATK that is 1.3?
Another possibility is that you are missing an R library (e.g. 'ggplot2'), that
is used by the VariantRecalibrator for building the plots. Start up an
interactive R session and type: "library('ggplot2')"
If you are missing the library, t
Hi,
Any chances someone could give me hint on this issue?
Thanks in advance,
Carlos
On Tue, Nov 29, 2011 at 2:02 PM, Carlos Borroto
wrote:
> Hi,
>
> I'm testing the GATK pipeline and I ran into a problem with "Variant
> Recalibrator" tool. It seems I don't have correctly configure R and
> GATK
Hi,
I'm testing the GATK pipeline and I ran into a problem with "Variant
Recalibrator" tool. It seems I don't have correctly configure R and
GATK on my instance, as this tool is failing with this error:
mv:
/Volumes/Data/Users/cjavier/galaxy_central/database/files/000/dataset_393.dat.pdf:
No such
