Re: [galaxy-dev] Galaxy - Bismark

2013-02-18 Thread Björn Grüning
Hi Charles, I will try to fix that as soon as possible. Will get back to you. Bjoern > Hi, > > > I' am running galaxy locally and I have installed Bismark and its > dependencies from the Galaxy main tool shed. I receive multiple errors > when using a small test dataset. > > > (1) My first er

[galaxy-dev] Galaxy - Bismark

2013-02-18 Thread Charles Murphy
Hi, I' am running galaxy locally and I have installed Bismark and its dependencies from the Galaxy main tool shed. I receive multiple errors when using a small test dataset. (1) My first error occurs when I try running Bismark bisulfite mapper (bowtie2): Error indexing reference sequence /bin/s