Hi Tanguy,
L-A is correct in that you can set using the tool id different cluster
options for different tools. For example I submit different tools to
different queues:
default_cluster_job_runner = drmaa://-q all.q -V/
upload1 = drmaa://-q short.q -V/
tophat = drmaa://-q long.q -V/
cufflinks = drmaa://-q long.q -V/
But I don't think this is what you want, as this is an one time
setting that you can't change at runtime. I think there was some talk
about dynamic DRMAA options base on the input size and tool, but can't
tell what is the status on that feature.
Hope it helps,
Carlos
2012/2/17 Louise-Amélie Schmitt louise-amelie.schm...@embl.de:
Hi Tanguy,
You can set that at the very bottom of your universe_wsgi.ini file. I did it
myself with Torque to set a different behavior for a couple of tools, it
works fine. The related Wiki page is here:
http://wiki.g2.bx.psu.edu/Admin/Config/Performance/Cluster :)
Best,
L-A
Le 17/02/2012 09:43, Tanguy LE CARROUR a écrit :
Hi!
Is there a way to specify parameters for the job submission on the
cluster from the tool configuration file?
Let's say I want tool A to be submitted with -pe smp 8 but tool B
submitted with -l mem_free=500.
Is it already supported? I could not find it in the wiki.
... or do I have to start digging in the code and try to implement it?!
^_^'
Best regards,
Tanguy
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