Re: [galaxy-dev] Galaxy startup takes very long. Normal?

2014-03-27 Thread Geert Vandeweyer
I'm using galxy-dist. That's why I don't have the setting. Thanks for the information, I'll wait for the next stable release and update the settings then. Geert On 03/26/2014 01:59 PM, Greg Von Kuster wrote: The changeset that made this a configurable setting was committed to the stable

Re: [galaxy-dev] Galaxy startup takes very long. Normal?

2014-03-26 Thread Geert Vandeweyer
hi Greg, I don't have that setting in my universe. Should I just add it? The output of hg summary is (hg incoming doesn't show any available updates): parent: 12276:dc067a95261d tip Added tag release_2014.02.10 for changeset 5e605ed6069f branch: stable commit: 22 modified, 1 deleted, 127

Re: [galaxy-dev] Galaxy startup takes very long. Normal?

2014-03-26 Thread Greg Von Kuster
Hi Geert, The setting should be in your universe_wsgi.ini.sample, and you woud have to manually edit your universe_wsgi.ini to add it. I would say that 125 installed packages is probably what is causing the slow starts. This feature is not currently useful, so it can be set to not function

Re: [galaxy-dev] Galaxy startup takes very long. Normal?

2014-03-26 Thread Geert Vandeweyer
Hi Greg, The setting was not in my universe_sample file. I added it, set log_info to DEBUG and restarted galaxy. The startup time remained the same, and there were many entries in the log file indicating that the lag is indeed the creation of the dependency system:

Re: [galaxy-dev] Galaxy startup takes very long. Normal?

2014-03-26 Thread Greg Von Kuster
The changeset that made this a configurable setting was committed to the stable branch in d270d3c, which was committed on 2014-02-19 https://bitbucket.org/galaxy/galaxy-central/commits/d270d3cf7627a42b6fac2aa69701deadb89c8ffc If you are tracking the stable branch in the galaxy central repo

[galaxy-dev] Galaxy startup takes very long. Normal?

2014-03-25 Thread Geert Vandeweyer
Dear all, I'm wondering if the following behaviour is normal. Since I reinstalled the latest galaxy distribution, every restart hangs/loads for up to 10 minutes at the following lines: galaxy.model.migrate.check INFO 2014-03-25 15:56:57,965 At database version 118

Re: [galaxy-dev] Galaxy startup takes very long. Normal?

2014-03-25 Thread Greg Von Kuster
Hello Geert, Do you have a lot of repositories installed from the Tool Shed into you Galaxy instance? if so, the time you're experience may be due to loading the in-memory installed repository registry. Using this registry is optional, but the default configuration setting is to use it. You