Hi,
Thanks for the feedback. We are going to try debug=True (it was set to False)
and get back to you. Our latest traceback is listed below...
Exception happened during processing of request from ('xxx.xxx.xxx.xxx', 59168)
Traceback (most recent call last):
File
Hi,
We've just re run a Tophat run with debug=true and this is the email I got back
from our HPC guys:
For the instance that just crashed I ran it interactively i.e. not in daemon
mode and with debug = True
The only error I'm seeing on the screen is:
./run.sh: line 48: 8705 Segmentation
Hi,
We seem to have sorted out the problem of TopHat failing to run but now we have
a new problem. When TopHat runs with a large genome (but not with small
genomes), it finishes the run fine and all the data is there but the web
interface falls over about 8 hours into the run and when we try
David,
What is the full stack trace that you're seeing? The stack trace is the text
below Traceback and identifies the exact location where the problem occurs.
Are you following these guidelines:
http://wiki.g2.bx.psu.edu/Admin/NGS%20Local%20Setup
for setting up large genomes in Galaxy?
