Re: [galaxy-dev] How can I populate a data_collection output ?

2014-07-30 Thread John Chilton
Hey David, Nothing on the wiki yet - the documentation I have been pointing people at is my GCC 2014 presentation on this work http://bit.ly/gcc2014workflows. It has details on tool developer side of this as well as some end-user screenshots. There was some initial support for dataset collection

Re: [galaxy-dev] How can I populate a data_collection output ?

2014-07-30 Thread julie dubois
Hello John, Thank you for your answer. We shall thus wait. Julie 2014-07-29 22:43 GMT+02:00 David Kelly : > Hi John, > > Is there any documentation that explains how dataset collections work? I'd > like to learn more about it. > > Thanks, > David > > > On Tue, Jul 29, 2014 at 3:20 PM, John Chilt

Re: [galaxy-dev] How can I populate a data_collection output ?

2014-07-29 Thread David Kelly
Hi John, Is there any documentation that explains how dataset collections work? I'd like to learn more about it. Thanks, David On Tue, Jul 29, 2014 at 3:20 PM, John Chilton wrote: > Hello Julie, > > Right now Galaxy can implicitly create collections by running a tool > that takes in a singl

Re: [galaxy-dev] How can I populate a data_collection output ?

2014-07-29 Thread John Chilton
Hello Julie, Right now Galaxy can implicitly create collections by running a tool that takes in a single input or a paired dataset over say a list of inputs or a list of paired inputs but tools cannot explicitly create dataset collections. I think Galaxy's current capabilities add a lot of usefu

[galaxy-dev] How can I populate a data_collection output ?

2014-07-28 Thread julie dubois
Hi all, I'm working with data_collection as type of input in xml files. but I use all the datasets of a collection to compute some results that I want to push in a "data_collection" output. I know how take each dataset of a data_collection input with my script, like this : ... for $f in $input ...