Re: [galaxy-dev] Import history from web server to local server
Sorry for my stupid ask but when I click on the link provide by the option Export to File, I'm redirected on web page which shows me this message : Still exporting history MyHistory;pleas check back soon. Link: http://cistrome.org/ap/history/export_archive?id=### I have no possibility to download the history! What is the problem? I have certainly mis-understanded your explaination. Thanks. julie 2013/2/6 Jeremy Goecks jeremy.goe...@emory.edu Unfortunately using wget won't work in this case. The reason you have access to the history is your Galaxy cookie, which isn't shared with wget/curl. You'll need to click on the export link in your Web browser to download the history to your local computer and then move it to a local server. Best, J. On Feb 6, 2013, at 12:07 PM, julie dubois wrote: Thanks! Just one ask : How can I download this compressed history : is it the same that : wget url_of_exported_history and copy the file from this command in a local server ? Because this file is not an archive but a text file with html code thanks again. Julie 2013/2/6 Jeremy Goecks jeremy.goe...@emory.edu Ah, I see the issue: the Cistrome instance cannot be used anonymously (without login). It's not possible for one Galaxy instance to work with another instance's history because instances work with objects anonymously rather than using login credentials. For now, you can download/copy the compressed history to a Web-accessible location (e.g. local web server, Dropbox) and import the history from that location. We'll look into improving this in the future. Best, J. On Feb 6, 2013, at 11:10 AM, julie dubois wrote: Hi, thanks for your help. I've tested your procedure and it doesn't work. I have the same error. Sorry and thanks for the creation of the card. Julie 2013/2/6 Jeremy Goecks jeremy.goe...@emory.edu This is likely a permissions issue: importing your history into another Galaxy instance requires the history to be accessible. Here's a solution that, while ugly, should work: (1) Make the history accessible by going to Share/Publish and clicking the option to make it accessible. (2) Export your history again. (3) Use the history URL to import to another instance. I've created a card for enhancements to this feature that will make this process easier in the future. https://trello.com/c/qCfAWeYU Best, J On Feb 6, 2013, at 5:00 AM, julie dubois wrote: Hi all, I'm trying to import an history from the web server to my local server. First I've chosen Export to File in the history menu and I've seen a message with an url. Second in my local server I've created a new history and I chosen Import from File in my new history menu. I've pasted the url in the formular and A message says : Importing history from ' http://cistrome.org/ap/history/export_archive?id='. This history will be visible when the import is complete But there is nothing in my new history and it seems that no operation is running!!! Is it normal? Another idea to transfer an hitory and his datasets in another history? Thanks. julie ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] Import history from web server to local server
This means the history is still being compressed; large histories can take a long time to compressed, so you'll have to be patient and check back periodically to see when the history is ready for download. Best, J. On Feb 7, 2013, at 4:02 AM, julie dubois wrote: Sorry for my stupid ask but when I click on the link provide by the option Export to File, I'm redirected on web page which shows me this message : Still exporting history MyHistory;pleas check back soon. Link: http://cistrome.org/ap/history/export_archive?id=### I have no possibility to download the history! What is the problem? I have certainly mis-understanded your explaination. Thanks. julie 2013/2/6 Jeremy Goecks jeremy.goe...@emory.edu Unfortunately using wget won't work in this case. The reason you have access to the history is your Galaxy cookie, which isn't shared with wget/curl. You'll need to click on the export link in your Web browser to download the history to your local computer and then move it to a local server. Best, J. On Feb 6, 2013, at 12:07 PM, julie dubois wrote: Thanks! Just one ask : How can I download this compressed history : is it the same that : wget url_of_exported_history and copy the file from this command in a local server ? Because this file is not an archive but a text file with html code thanks again. Julie 2013/2/6 Jeremy Goecks jeremy.goe...@emory.edu Ah, I see the issue: the Cistrome instance cannot be used anonymously (without login). It's not possible for one Galaxy instance to work with another instance's history because instances work with objects anonymously rather than using login credentials. For now, you can download/copy the compressed history to a Web-accessible location (e.g. local web server, Dropbox) and import the history from that location. We'll look into improving this in the future. Best, J. On Feb 6, 2013, at 11:10 AM, julie dubois wrote: Hi, thanks for your help. I've tested your procedure and it doesn't work. I have the same error. Sorry and thanks for the creation of the card. Julie 2013/2/6 Jeremy Goecks jeremy.goe...@emory.edu This is likely a permissions issue: importing your history into another Galaxy instance requires the history to be accessible. Here's a solution that, while ugly, should work: (1) Make the history accessible by going to Share/Publish and clicking the option to make it accessible. (2) Export your history again. (3) Use the history URL to import to another instance. I've created a card for enhancements to this feature that will make this process easier in the future. https://trello.com/c/qCfAWeYU Best, J On Feb 6, 2013, at 5:00 AM, julie dubois wrote: Hi all, I'm trying to import an history from the web server to my local server. First I've chosen Export to File in the history menu and I've seen a message with an url. Second in my local server I've created a new history and I chosen Import from File in my new history menu. I've pasted the url in the formular and A message says : Importing history from 'http://cistrome.org/ap/history/export_archive?id='. This history will be visible when the import is complete But there is nothing in my new history and it seems that no operation is running!!! Is it normal? Another idea to transfer an hitory and his datasets in another history? Thanks. julie ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] Import history from web server to local server
THANKS a lot It works. It's a very big advance for us. Thanks again. Julie 2013/2/7 Jeremy Goecks jeremy.goe...@emory.edu This means the history is still being compressed; large histories can take a long time to compressed, so you'll have to be patient and check back periodically to see when the history is ready for download. Best, J. On Feb 7, 2013, at 4:02 AM, julie dubois wrote: Sorry for my stupid ask but when I click on the link provide by the option Export to File, I'm redirected on web page which shows me this message : Still exporting history MyHistory;pleas check back soon. Link: http://cistrome.org/ap/history/export_archive?id=### I have no possibility to download the history! What is the problem? I have certainly mis-understanded your explaination. Thanks. julie 2013/2/6 Jeremy Goecks jeremy.goe...@emory.edu Unfortunately using wget won't work in this case. The reason you have access to the history is your Galaxy cookie, which isn't shared with wget/curl. You'll need to click on the export link in your Web browser to download the history to your local computer and then move it to a local server. Best, J. On Feb 6, 2013, at 12:07 PM, julie dubois wrote: Thanks! Just one ask : How can I download this compressed history : is it the same that : wget url_of_exported_history and copy the file from this command in a local server ? Because this file is not an archive but a text file with html code thanks again. Julie 2013/2/6 Jeremy Goecks jeremy.goe...@emory.edu Ah, I see the issue: the Cistrome instance cannot be used anonymously (without login). It's not possible for one Galaxy instance to work with another instance's history because instances work with objects anonymously rather than using login credentials. For now, you can download/copy the compressed history to a Web-accessible location (e.g. local web server, Dropbox) and import the history from that location. We'll look into improving this in the future. Best, J. On Feb 6, 2013, at 11:10 AM, julie dubois wrote: Hi, thanks for your help. I've tested your procedure and it doesn't work. I have the same error. Sorry and thanks for the creation of the card. Julie 2013/2/6 Jeremy Goecks jeremy.goe...@emory.edu This is likely a permissions issue: importing your history into another Galaxy instance requires the history to be accessible. Here's a solution that, while ugly, should work: (1) Make the history accessible by going to Share/Publish and clicking the option to make it accessible. (2) Export your history again. (3) Use the history URL to import to another instance. I've created a card for enhancements to this feature that will make this process easier in the future. https://trello.com/c/qCfAWeYU Best, J On Feb 6, 2013, at 5:00 AM, julie dubois wrote: Hi all, I'm trying to import an history from the web server to my local server. First I've chosen Export to File in the history menu and I've seen a message with an url. Second in my local server I've created a new history and I chosen Import from File in my new history menu. I've pasted the url in the formular and A message says : Importing history from ' http://cistrome.org/ap/history/export_archive?id='. This history will be visible when the import is complete But there is nothing in my new history and it seems that no operation is running!!! Is it normal? Another idea to transfer an hitory and his datasets in another history? Thanks. julie ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
[galaxy-dev] Import history from web server to local server
Hi all, I'm trying to import an history from the web server to my local server. First I've chosen Export to File in the history menu and I've seen a message with an url. Second in my local server I've created a new history and I chosen Import from File in my new history menu. I've pasted the url in the formular and A message says : Importing history from ' http://cistrome.org/ap/history/export_archive?id='. This history will be visible when the import is complete But there is nothing in my new history and it seems that no operation is running!!! Is it normal? Another idea to transfer an hitory and his datasets in another history? Thanks. julie ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] Import history from web server to local server
This is likely a permissions issue: importing your history into another Galaxy instance requires the history to be accessible. Here's a solution that, while ugly, should work: (1) Make the history accessible by going to Share/Publish and clicking the option to make it accessible. (2) Export your history again. (3) Use the history URL to import to another instance. I've created a card for enhancements to this feature that will make this process easier in the future. https://trello.com/c/qCfAWeYU Best, J On Feb 6, 2013, at 5:00 AM, julie dubois wrote: Hi all, I'm trying to import an history from the web server to my local server. First I've chosen Export to File in the history menu and I've seen a message with an url. Second in my local server I've created a new history and I chosen Import from File in my new history menu. I've pasted the url in the formular and A message says : Importing history from 'http://cistrome.org/ap/history/export_archive?id='. This history will be visible when the import is complete But there is nothing in my new history and it seems that no operation is running!!! Is it normal? Another idea to transfer an hitory and his datasets in another history? Thanks. julie ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] Import history from web server to local server
Hi, thanks for your help. I've tested your procedure and it doesn't work. I have the same error. Sorry and thanks for the creation of the card. Julie 2013/2/6 Jeremy Goecks jeremy.goe...@emory.edu This is likely a permissions issue: importing your history into another Galaxy instance requires the history to be accessible. Here's a solution that, while ugly, should work: (1) Make the history accessible by going to Share/Publish and clicking the option to make it accessible. (2) Export your history again. (3) Use the history URL to import to another instance. I've created a card for enhancements to this feature that will make this process easier in the future. https://trello.com/c/qCfAWeYU Best, J On Feb 6, 2013, at 5:00 AM, julie dubois wrote: Hi all, I'm trying to import an history from the web server to my local server. First I've chosen Export to File in the history menu and I've seen a message with an url. Second in my local server I've created a new history and I chosen Import from File in my new history menu. I've pasted the url in the formular and A message says : Importing history from ' http://cistrome.org/ap/history/export_archive?id='. This history will be visible when the import is complete But there is nothing in my new history and it seems that no operation is running!!! Is it normal? Another idea to transfer an hitory and his datasets in another history? Thanks. julie ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] Import history from web server to local server
Ah, I see the issue: the Cistrome instance cannot be used anonymously (without login). It's not possible for one Galaxy instance to work with another instance's history because instances work with objects anonymously rather than using login credentials. For now, you can download/copy the compressed history to a Web-accessible location (e.g. local web server, Dropbox) and import the history from that location. We'll look into improving this in the future. Best, J. On Feb 6, 2013, at 11:10 AM, julie dubois wrote: Hi, thanks for your help. I've tested your procedure and it doesn't work. I have the same error. Sorry and thanks for the creation of the card. Julie 2013/2/6 Jeremy Goecks jeremy.goe...@emory.edu This is likely a permissions issue: importing your history into another Galaxy instance requires the history to be accessible. Here's a solution that, while ugly, should work: (1) Make the history accessible by going to Share/Publish and clicking the option to make it accessible. (2) Export your history again. (3) Use the history URL to import to another instance. I've created a card for enhancements to this feature that will make this process easier in the future. https://trello.com/c/qCfAWeYU Best, J On Feb 6, 2013, at 5:00 AM, julie dubois wrote: Hi all, I'm trying to import an history from the web server to my local server. First I've chosen Export to File in the history menu and I've seen a message with an url. Second in my local server I've created a new history and I chosen Import from File in my new history menu. I've pasted the url in the formular and A message says : Importing history from 'http://cistrome.org/ap/history/export_archive?id='. This history will be visible when the import is complete But there is nothing in my new history and it seems that no operation is running!!! Is it normal? Another idea to transfer an hitory and his datasets in another history? Thanks. julie ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] Import history from web server to local server
Thanks! Just one ask : How can I download this compressed history : is it the same that : wget url_of_exported_history and copy the file from this command in a local server ? Because this file is not an archive but a text file with html code thanks again. Julie 2013/2/6 Jeremy Goecks jeremy.goe...@emory.edu Ah, I see the issue: the Cistrome instance cannot be used anonymously (without login). It's not possible for one Galaxy instance to work with another instance's history because instances work with objects anonymously rather than using login credentials. For now, you can download/copy the compressed history to a Web-accessible location (e.g. local web server, Dropbox) and import the history from that location. We'll look into improving this in the future. Best, J. On Feb 6, 2013, at 11:10 AM, julie dubois wrote: Hi, thanks for your help. I've tested your procedure and it doesn't work. I have the same error. Sorry and thanks for the creation of the card. Julie 2013/2/6 Jeremy Goecks jeremy.goe...@emory.edu This is likely a permissions issue: importing your history into another Galaxy instance requires the history to be accessible. Here's a solution that, while ugly, should work: (1) Make the history accessible by going to Share/Publish and clicking the option to make it accessible. (2) Export your history again. (3) Use the history URL to import to another instance. I've created a card for enhancements to this feature that will make this process easier in the future. https://trello.com/c/qCfAWeYU Best, J On Feb 6, 2013, at 5:00 AM, julie dubois wrote: Hi all, I'm trying to import an history from the web server to my local server. First I've chosen Export to File in the history menu and I've seen a message with an url. Second in my local server I've created a new history and I chosen Import from File in my new history menu. I've pasted the url in the formular and A message says : Importing history from ' http://cistrome.org/ap/history/export_archive?id='. This history will be visible when the import is complete But there is nothing in my new history and it seems that no operation is running!!! Is it normal? Another idea to transfer an hitory and his datasets in another history? Thanks. julie ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] Import history from web server to local server
Unfortunately using wget won't work in this case. The reason you have access to the history is your Galaxy cookie, which isn't shared with wget/curl. You'll need to click on the export link in your Web browser to download the history to your local computer and then move it to a local server. Best, J. On Feb 6, 2013, at 12:07 PM, julie dubois wrote: Thanks! Just one ask : How can I download this compressed history : is it the same that : wget url_of_exported_history and copy the file from this command in a local server ? Because this file is not an archive but a text file with html code thanks again. Julie 2013/2/6 Jeremy Goecks jeremy.goe...@emory.edu Ah, I see the issue: the Cistrome instance cannot be used anonymously (without login). It's not possible for one Galaxy instance to work with another instance's history because instances work with objects anonymously rather than using login credentials. For now, you can download/copy the compressed history to a Web-accessible location (e.g. local web server, Dropbox) and import the history from that location. We'll look into improving this in the future. Best, J. On Feb 6, 2013, at 11:10 AM, julie dubois wrote: Hi, thanks for your help. I've tested your procedure and it doesn't work. I have the same error. Sorry and thanks for the creation of the card. Julie 2013/2/6 Jeremy Goecks jeremy.goe...@emory.edu This is likely a permissions issue: importing your history into another Galaxy instance requires the history to be accessible. Here's a solution that, while ugly, should work: (1) Make the history accessible by going to Share/Publish and clicking the option to make it accessible. (2) Export your history again. (3) Use the history URL to import to another instance. I've created a card for enhancements to this feature that will make this process easier in the future. https://trello.com/c/qCfAWeYU Best, J On Feb 6, 2013, at 5:00 AM, julie dubois wrote: Hi all, I'm trying to import an history from the web server to my local server. First I've chosen Export to File in the history menu and I've seen a message with an url. Second in my local server I've created a new history and I chosen Import from File in my new history menu. I've pasted the url in the formular and A message says : Importing history from 'http://cistrome.org/ap/history/export_archive?id='. This history will be visible when the import is complete But there is nothing in my new history and it seems that no operation is running!!! Is it normal? Another idea to transfer an hitory and his datasets in another history? Thanks. julie ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
