On Thu, Nov 28, 2013 at 5:13 PM, Peter Cock p.j.a.c...@googlemail.com wrote:
Hello all,
FAO: Administrators of local Galaxy instances using the NCBI BLAST+ wrappers.
Over on the galaxy_blast repository I have been updating the
NCBI BLAST+ wrappers (including unit tests) to work with the
On Wed, Dec 4, 2013 at 4:21 PM, Peter Cock p.j.a.c...@googlemail.com wrote:
On Mon, Dec 2, 2013 at 3:37 PM, Peter Cock p.j.a.c...@googlemail.com wrote:
On Sun, Dec 1, 2013 at 7:10 PM, Björn Grüning
bjoern.gruen...@pharmazie.uni-freiburg.de wrote:
Great. I'll probably merge the c25 branch
Il 2013-12-04 20:48 Jim Johnson ha scritto:
On 12/4/13, 10:21 AM, Peter Cock wrote:
On Mon, Dec 2, 2013 at 3:37 PM, Peter Cock
p.j.a.c...@googlemail.com [1] wrote:
On Sun, Dec 1, 2013 at 7:10 PM, Björn Grüning
bjoern.gruen...@pharmazie.uni-freiburg.de [2] wrote:
Great. I'll probably merge
Peter Cock wrote:
I've been working on this using JJ's work on column picking
in the BLAST XML to tabular tool - viewable here:
...
I'm considering splitting the column picker into three, the
standard 12 columns, the further 13 used in our extended
25 column output, and a third category
On Mon, Dec 2, 2013 at 3:37 PM, Peter Cock p.j.a.c...@googlemail.com
wrote:
On Sun, Dec 1, 2013 at 7:10 PM, Björn Grüning
bjoern.gruen...@pharmazie.uni-freiburg.de wrote:
Great. I'll probably merge the c25 branch and push that
to the Test Tool Shed next week (adding the descriptions
as a new
On 12/4/13, 10:21 AM, Peter Cock wrote:
On Mon, Dec 2, 2013 at 3:37 PM, Peter Cock p.j.a.c...@googlemail.com
wrote:
On Sun, Dec 1, 2013 at 7:10 PM, Bjrn Grning
On Sun, Dec 1, 2013 at 7:10 PM, Björn Grüning wrote:
Peter wrote:
Great. I'll probably merge the c25 branch and push that
to the Test Tool Shed next week (adding the descriptions
as a new 25th column to the default extended tabular
output).
+1
The 24 column output will be replaced, right?
Il 2013-12-02 13:08 Peter Cock ha scritto:
On Sun, Dec 1, 2013 at 7:10 PM, Björn Grüning wrote:
Peter wrote:
But, I would think we should offer the option to get all
available result
information. The multi-select checkboxes could serve that
purpose.
OK, so adding a pick-you-own columns
On 12/2/13, 7:03 AM, Nicola Soranzo wrote:
Il 2013-12-02 13:08 Peter Cock ha scritto:
On Sun, Dec 1, 2013 at 7:10 PM, Björn Grüning wrote:
Peter wrote:
But, I would think we should offer the option to get all available result
information. The multi-select checkboxes could serve that
On Sun, Dec 1, 2013 at 7:10 PM, Björn Grüning
bjoern.gruen...@pharmazie.uni-freiburg.de wrote:
Hi,
On Fri, Nov 29, 2013 at 3:26 PM, Jim Johnson johns...@umn.edu wrote:
Peter,
It's good news that the description field is available in tabular format.
That has been the primary reason for
Hi,
On Fri, Nov 29, 2013 at 3:26 PM, Jim Johnson johns...@umn.edu wrote:
Peter,
It's good news that the description field is available in tabular format.
That has been the primary reason for using the xml format.
Yes.
The tabular format allows use of the task parallel feature.
On Fri, Nov 29, 2013 at 3:26 PM, Jim Johnson johns...@umn.edu wrote:
Peter,
It's good news that the description field is available in tabular format.
That has been the primary reason for using the xml format.
Yes.
The tabular format allows use of the task parallel feature.
We already
Peter,
It's good news that the description field is available in tabular format.
That has been the primary reason for using the xml format. The tabular format
allows use of the task parallel feature.
I think you have good default options for output format.
But, I would think we should
Hello all,
FAO: Administrators of local Galaxy instances using the NCBI BLAST+ wrappers.
Over on the galaxy_blast repository I have been updating the
NCBI BLAST+ wrappers (including unit tests) to work with the
current release, NCBI BLAST+ 2.2.28 (aka BLAST 2.2.28+):
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