Re: [galaxy-dev] Incorrect revision getting referenced in a complex tool dependency - why?

2014-09-12 Thread Melissa Cline
Thanks, folks! Everything you've said has clarified many things, and I'm working on putting them into practice. But in the meantime, I've got a new error condition, with the same repositories (and complex repository dependencies), and could use some guidance. I started to see this error conditio

Re: [galaxy-dev] Incorrect revision getting referenced in a complex tool dependency - why?

2014-09-12 Thread Dave Bouvier
Melissa, The revision recorded in the filesystem path can seem odd at first glance. My inline responses should hopefully clarify that. --Dave B. On 09/10/2014 05:49 PM, Melissa Cline wrote: Hi Folks, Okay, I really need debugging ideas on this one. I have three repositories I'm developi

Re: [galaxy-dev] Incorrect revision getting referenced in a complex tool dependency - why?

2014-09-11 Thread Björn Grüning
Hi Melissa, a few remarks to your wrappers, hopefully it will fix a few issues. * If you put your python files and your java files next to your wrapper you do not need to install them. I think you can remove the tool_dependency file and it should work. * if you stick to this approach you shoul

[galaxy-dev] Incorrect revision getting referenced in a complex tool dependency - why?

2014-09-10 Thread Melissa Cline
Hi Folks, Okay, I really need debugging ideas on this one. I have three repositories I'm developing under the test toolshed. They're named start_xena, xena_import and xena_find_datasets (they're all under visualization). start_xena contains a simple tool dependency to a package named installXen