[galaxy-dev] Inform tool interface with data specific to selected dataset

2014-05-09 Thread Eric Rasche
Howdy All, I have a set of tools in two parts; the first part builds some databases and prepares some data structures, the second tool plots a subset of the data in the data structure. Specifically, the data in the structures are named genomes. The second tools needs to know which genomes, and

Re: [galaxy-dev] Inform tool interface with data specific to selected dataset

2014-05-09 Thread Björn Grüning
Hi Eric, the following should work, but is a real hack and not recommended, I think. https://galaxy-dist.readthedocs.org/en/latest/_modules/galaxy/tools/parameters/dynamic_options.html code file=filter_genome_from_file.py param name = a label = one input format = data

Re: [galaxy-dev] Inform tool interface with data specific to selected dataset

2014-05-09 Thread Eric Rasche
Hi Björn, Brilliant, thank you. That should be exactly what I need. Good to know all of these dynamic options filters exist. 09.05.2014, 15:54, Björn Grüning bjoern.gruen...@gmail.com: Hi Eric, the following should work, but is a real hack and not recommended, I think.

Re: [galaxy-dev] Inform tool interface with data specific to selected dataset

2014-05-09 Thread Dooley, Damion
Hello, Eric, If the dynamic filters approach doesn't work out I can send you an approach that worked for me. It involves creating a tool-generated html report that contains a form which provides selection choices; and the form is set to submit to a 2nd tool of your choice tool (it contains

Re: [galaxy-dev] Inform tool interface with data specific to selected dataset

2014-05-09 Thread Igor Topcin
Hi Damion, Would you mind sharing your approach with us all? Thanks! Igor On May 9, 2014 1:51 PM, Dooley, Damion damion.doo...@bccdc.ca wrote: Hello, Eric, If the dynamic filters approach doesn't work out I can send you an approach that worked for me. It involves creating a tool-generated

Re: [galaxy-dev] Inform tool interface with data specific to selected dataset

2014-05-09 Thread Dooley, Damion
To: Dooley, Damion Cc: galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] Inform tool interface with data specific to selected dataset Hi Damion, Would you mind sharing your approach with us all? Thanks! Igor On May 9, 2014 1:51 PM, Dooley, Damion damion.doo...@bccdc.camailto:damion.doo