Dear all,
I am having the same problem as Linda with a fresh installation of
version 20130603.
In the thread of her mail Dannon Baker said :
That said, this doesn't resolve the mysql index issues, which I'm
currently working on. I hope to have a fix for them available soon,
though.
I
Hi Jean-François,
The index issues preventing a new instance from starting are resolved in
the stable branch of galaxy-central; if you pull updates from that branch
you should be able to start a new instance. While the instance will start
and run, there are other peculiarities I still need to
Thanks Dannon,
I indeed managed to have the galaxy-central version installed.
I already see some problems but I will open another thread if necessary.
Regards the DB engine, this new Galaxy I am deploying now is only a toy
server I want to use in the Galaxy meeting in Oslo.
I would like to
Date: 06/06/2013 04:41 PM
Subject:Re: [galaxy-dev] Installation of 20130603 Galaxy image with
MySQL fails
Hi Linda,
Sorry I wasn't clear before. The fix for that first issue is in
galaxy-central's stable branch, which will be migrated to galaxy-dist
probably sometime next
,
From: Björn Grüning bjoern.gruen...@pharmazie.uni-freiburg.de
To: Linda Cham/Poughkeepsie/IBM@IBMUS
Cc: Dannon Baker dannon.ba...@gmail.com, Galaxy Dev
galaxy-dev@lists.bx.psu.edu
Date: 06/05/2013 04:30 PM
Subject: Re: [galaxy-dev] Installation of 20130603 Galaxy image with
MySQL fails
Hi. I am new to the Galaxy forum and I am trying to setup a new local
Galaxy instance with MySQL on RH6.2 x86_64.
On a newly installed OS node, using the hg clone command (hg clone
https://bitbucket.org/galaxy/galaxy-dist#stable) which gets the current
Galaxy 20130603 image, I am getting the
Hi Linda,
The decorator issue should be resolved in galaxy-central now. I'm setting
up a test environment to see if I can reproduce the mysql issue now, and
will let you know what I come up with.
Thanks!
-Dannon
On Wed, Jun 5, 2013 at 11:12 AM, Linda Cham lc...@us.ibm.com wrote:
Hi. I am
Hi Dannon,
Thanks. I tried to do the hg pull and update and hg tip but I do not see
the changes in my working directory. So I added the one liner eggs.require
( decorator ) to scripts/manage_db.py.
Ran the sh manage_db.sh upgrade and get this error:
File
Hi Linda,
Hi Dannon,
Thanks. I tried to do the hg pull and update and hg tip but I do not
see the changes in my working directory. So I added the one liner
eggs.require( decorator ) to scripts/manage_db.py.
Ran the sh manage_db.sh upgrade and get this error:
that is really strange. Can
@lists.bx.psu.edu
Date: 06/05/2013 04:30 PM
Subject:Re: [galaxy-dev] Installation of 20130603 Galaxy image with
MySQL fails
Hi Linda,
Hi Dannon,
Thanks. I tried to do the hg pull and update and hg tip but I do not
see the changes in my working directory. So I added
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