Re: [galaxy-dev] Installing FreeBayes via Toolshed: Tool dependency installation error

2013-05-01 Thread Iry Witham
@lists.bx.psu.edumailto:galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] Installing FreeBayes via Toolshed: Tool dependency installation error Looks like you're missing cmake, a dependency for building FreeBayes. If you're able to install that for your system (available in most package managers) you should

Re: [galaxy-dev] Installing FreeBayes via Toolshed: Tool dependency installation error

2013-05-01 Thread Dannon Baker
@lists.bx.psu.edu galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] Installing FreeBayes via Toolshed: Tool dependency installation error Looks like you're missing cmake, a dependency for building FreeBayes. If you're able to install that for your system (available in most package managers

Re: [galaxy-dev] Installing FreeBayes via Toolshed: Tool dependency installation error

2013-05-01 Thread Iry Witham
Witham iry.wit...@jax.orgmailto:iry.wit...@jax.org Cc: galaxy-dev@lists.bx.psu.edumailto:galaxy-dev@lists.bx.psu.edu galaxy-dev@lists.bx.psu.edumailto:galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] Installing FreeBayes via Toolshed: Tool dependency installation error This one may be a little

Re: [galaxy-dev] Installing FreeBayes via Toolshed: Tool dependency installation error

2013-05-01 Thread Daniel Blankenberg
@lists.bx.psu.edu galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] Installing FreeBayes via Toolshed: Tool dependency installation error This one may be a little out of my wheelhouse, but did you verify that the reference it's trying to use is available? Does this same job work if you try

[galaxy-dev] Installing FreeBayes via Toolshed: Tool dependency installation error

2013-04-30 Thread Iry Witham
Hi All, I am trying to get Freebayes installed on a cloud man instance from the galaxy toolshed. I have successfully installed the Samtools 0.1.18 package, but the freebayes package errors. The Error is: Tool shed repository: freebayes Tool shed repository changeset revision: 28e422c589ac

Re: [galaxy-dev] Installing FreeBayes via Toolshed: Tool dependency installation error

2013-04-30 Thread Dannon Baker
Looks like you're missing cmake, a dependency for building FreeBayes. If you're able to install that for your system (available in most package managers) you should be good to go. -Dannon On Tue, Apr 30, 2013 at 1:03 PM, Iry Witham iry.wit...@jax.org wrote: Hi All, I am trying to get