Hi all,
Installing htseq-count with dependencies fails on my system: htseq-count
installs four dependencies (numpy, picard, samtools, htseq) , of which
one fails (htseq), strangely enough.
The error is:
error: can't create or remove files in install directory
The following error occurred while trying to add or remove files in the
installation directory:
[Errno 2] No such file or directory:
'/apps/htseq/0.5.3p9/lparsons/htseq_count/f320093f1e8e/lib64/python/test-easy-install-856.pth'
The installation directory you specified (via --install-dir, --prefix, or
the distutils default setting) was:
/apps/htseq/0.5.3p9/lparsons/htseq_count/f320093f1e8e/lib64/python/
This directory does not currently exist. Please create it and try again, or
choose a different installation directory (using the -d or --install-dir
option).
The /apps directory is completely owned by Galaxy. I tried to create
that missing directory (reported above), but got a little stuck, since
uninstalling the dependency removed that directory again.
The tool created the folder
/apps/htseq/0.5.3p9/lparsons/htseq_count/f320093f1e8e
with contents:
INSTALLATION.log lib
Next I looked to the tool_dependency.xml, but with my limited experience
did not see something obvious.
Thanks for any hint, (prefer to get the installation working from the
toolshed)
Joachim
--
Joachim Jacob
Rijvisschestraat 120, 9052 Zwijnaarde
Tel: +32 9 244.66.34
Bioinformatics Training and Services (BITS)
http://www.bits.vib.be
@bitsatvib
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