Re: [galaxy-dev] Integration of STAR Aligner v2.2.0c into Galaxy

2013-01-18 Thread Jeremy Goecks
; Cc: 'galaxy-dev@lists.bx.psu.edu'; 'do...@cshl.edu' > Betreff: Re: [galaxy-dev] Integration of STAR Aligner v2.2.0c into Galaxy > > I have a very basic STAR wrapper that works: > > https://bitbucket.org/jgoecks/jeremys-code/src/fa1930a689b8e2f6b59cc1706e5ba0ed8

Re: [galaxy-dev] Integration of STAR Aligner v2.2.0c into Galaxy

2013-01-18 Thread Sorn, Patrick
#x27;; 'do...@cshl.edu' Betreff: Re: [galaxy-dev] Integration of STAR Aligner v2.2.0c into Galaxy I have a very basic STAR wrapper that works: https://bitbucket.org/jgoecks/jeremys-code/src/fa1930a689b8e2f6b59cc1706e5ba0ed8ad357be/galaxy/tool-wrappers/star.xml?at=default For now, the wra

Re: [galaxy-dev] Integration of STAR Aligner v2.2.0c into Galaxy

2013-01-18 Thread Sorn, Patrick
. Januar 2013 04:37 An: Sorn, Patrick Cc: 'galaxy-dev@lists.bx.psu.edu'; 'do...@cshl.edu' Betreff: Re: [galaxy-dev] Integration of STAR Aligner v2.2.0c into Galaxy I have a very basic STAR wrapper that works: https://bitbucket.org/jgoecks/jeremys-code/src/fa1930a689b8e2f6

Re: [galaxy-dev] Integration of STAR Aligner v2.2.0c into Galaxy

2013-01-17 Thread Jeremy Goecks
I have a very basic STAR wrapper that works: https://bitbucket.org/jgoecks/jeremys-code/src/fa1930a689b8e2f6b59cc1706e5ba0ed8ad357be/galaxy/tool-wrappers/star.xml?at=default For now, the wrapper does two things: maps RNA-seq reads and identifies chimeric reads/junctions. There are tons of option

[galaxy-dev] Integration of STAR Aligner v2.2.0c into Galaxy

2013-01-16 Thread Sorn, Patrick
Hi all, I want to integrate STAR Aligner v2.2.0c into Galaxy and I was wondering if anyone else is working on this? If nobody is, I would do this. Best regards, Patrick Sorn ___ Please keep all replies on the list by using "reply all" in y