Hello Amandin,
The job queue for NGS jobs on the public main Galaxy instance has been
very busy since last Friday. We have been tracking the queue carefully
all week and this afternoon took additional action to ensure fair access
to the public resource.
I didn't find any of your jobs in the queue - which likely means that
you have already benefited from the changes and your jobs have
processed. Thank you for your patience.
Just so you know (Galaxy does get busy at times), a job that is in a
grey waiting-to-run state is in the active queue. You always want to
leave these jobs alone and not stop and restart them - or you will lose
your place in the order and be moved back to the end of the queue. Also,
queue wait times can vary, from a few minutes up to a day if there is a
very large usage demand. But, if you intend to run the job on the public
instance, leaving the job as-is is the best strategy.
If your work is urgent, a local or cloud instance is always another
option: http://getgalaxy.org
Next time, you may want to send usage questions about the main public
instance (like this one) to the galaxy-u...@bx.psu.edu mailing list instead:
http://wiki.g2.bx.psu.edu/Support#Mailing_Lists
Best,
Jen
Galaxy team
On 7/11/12 2:42 AM, Amandin Talbot wrote:
Dear Galaxy Dev Team-
I try to run a job with Tophat for Illumina (version 1.5.0) but in my
history job always stay at Job is waiting to run.
I use the following parameters :
RNA-Seq FASTQ file: FASTQ Groomer on upload dataset
Reference Genome : build-in index : Chicken (Gallus gallus): galGal3 Full
Mate-paired : Single-end
TopHat settings : Defaults
How should i do to make this job running ?
Thanks in advance.
Amandin Talbot
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