Re: [galaxy-dev] Jobs are slow to start on my galaxy instance. Used to be much faster

2012-11-07 Thread Hans-Rudolf Hotz
Hi Thon Have you made any progress regarding the delays you've experienced? I had some time this morning and was digging in the code a little bitin '~/lib/galaxy/jobs/manager.py' there is on line 155: time.sleep( 5 ) and I am wondering is this delay really necessary? - needless to s

Re: [galaxy-dev] Jobs are slow to start on my galaxy instance. Used to be much faster

2012-10-24 Thread Nate Coraor
On Oct 23, 2012, at 12:55 PM, Anthonius deBoer wrote: > I created the index but that did not change anything... > I had sent James Taylor the schema as he requested, but I never heard > anything so I guess he must not have found anything weird... > > I am waiting to move my Galaxy server off to

Re: [galaxy-dev] Jobs are slow to start on my galaxy instance. Used to be much faster

2012-10-23 Thread James Taylor
On Tue, Oct 23, 2012 at 12:55 PM, Anthonius deBoer wrote: > I had sent James Taylor the schema as he requested, but I never heard > anything so I guess he must not have found anything weird Yes, it appears to have all the right indexes to me. __

Re: [galaxy-dev] Jobs are slow to start on my galaxy instance. Used to be much faster

2012-10-23 Thread Anthonius deBoer
I created the index but that did not change anything... I had sent James Taylor the schema as he requested, but I never heard anything so I guess he must not have found anything weird... I am waiting to move my Galaxy server off to a three server configuration, so I am hoping the problem will no

Re: [galaxy-dev] Jobs are slow to start on my galaxy instance. Used to be much faster

2012-10-23 Thread Hans-Rudolf Hotz
Hi Thon Sorry for re-activating an old e-mail thread. I am just curious, whether Nate's suggestion solved your problem? After our upgrade (from the "March 12th changeset 6799:40f1816d6857" to the "October 5th changeset 7824:b5bda7a5c345") we see long delays in the jobs going from queued to

Re: [galaxy-dev] Jobs are slow to start on my galaxy instance. Used to be much faster

2012-09-19 Thread Nate Coraor
On Sep 18, 2012, at 6:31 PM, Anthonius deBoer wrote: > Hi, > > Jobs that I start on my in-house Galaxy instance now take up to 3-4 min to go > from queued to Running, even though there is nothing much going on on the > galaxy server... > > I have been running this instance since June and use a

[galaxy-dev] Jobs are slow to start on my galaxy instance. Used to be much faster

2012-09-18 Thread Anthonius deBoer
Hi,Jobs that I start on my in-house Galaxy instance now take up to 3-4 min to go from queued to Running, even though there is nothing much going on on the galaxy server...I have been running this instance since June and use a relatively new version of Galaxy-central (Last update, 22-Aug changeset: