Re: [galaxy-dev] Jobs crash only in workflow context

2012-10-17 Thread James Taylor
Todd, this is definitely unusual. Can you post (or send directly)
relevant sections from the Galaxy log?

-- jt


On Tue, Oct 16, 2012 at 8:15 PM, Todd Oakley
todd.oak...@lifesci.ucsb.edu wrote:
 Hello,
 We just did a few tweaks to improve Galaxy performance, and a new issue
 popped up that I would like advice on troubleshooting.

 When we run workflows, we see that tools later in the workflow run and
 crash before the results they depend on have completed running.

 We can re-run the crashed jobs later and they work fine, suggesting that
 they are only failing in the context of running workflows.

 I'd appreciate any advice on how to start troubleshooting this problem.

 Thanks much!
 Todd


 --

 ***
 Todd Oakley, Professor
 Ecology Evolution and Marine Biology
 University of California, Santa Barbara
 Santa Barbara, CA 93106 USA
 ***

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[galaxy-dev] Jobs crash only in workflow context

2012-10-16 Thread Todd Oakley

Hello,
We just did a few tweaks to improve Galaxy performance, and a new 
issue popped up that I would like advice on troubleshooting.


When we run workflows, we see that tools later in the workflow run 
and crash before the results they depend on have completed running.


We can re-run the crashed jobs later and they work fine, suggesting 
that they are only failing in the context of running workflows.


I'd appreciate any advice on how to start troubleshooting this problem.

Thanks much!
Todd


--

***
Todd Oakley, Professor
Ecology Evolution and Marine Biology
University of California, Santa Barbara
Santa Barbara, CA 93106 USA
***

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