Re: [galaxy-dev] Jobs remain in queue until restart

2013-08-14 Thread Nate Coraor
Guru California, USA |p: +1 (650) 799-6839 |m: thondeb...@me.com From: galaxy-dev-boun...@lists.bx.psu.edu [mailto:galaxy-dev-boun...@lists.bx.psu.edu] On Behalf Of Thon Deboer Sent: Wednesday, July 17, 2013 11:31 PM To: galaxy-dev@lists.bx.psu.edu Subject: [galaxy-dev] Jobs remain

Re: [galaxy-dev] Jobs remain in queue until restart

2013-08-14 Thread Anthonius deBoer
I don't think it's a memory issue (but what made you say that?) since each process is hardly using any memory, although VIRT memory in top is showing 2.7GB per python process, RES is only ever going to 250MB and I have a 16GB machine (although SWAP is only 4GB but not using any of the swap either,

Re: [galaxy-dev] Jobs remain in queue until restart

2013-08-02 Thread Thon de Boer
: Wednesday, July 17, 2013 11:31 PM To: galaxy-dev@lists.bx.psu.edu Subject: [galaxy-dev] Jobs remain in queue until restart Hi, I have noticed that from time to time, the job queue seems to be stuck and can only be unstuck by restarting galaxy. The jobs seem to be in the queue state