[galaxy-dev] Linking Data Files
I am a total galaxy newbie who is setting up a galaxy server for a group of internal researchers in order to do RNASeq analysis. I can see where I can upload libraries from the galaxy server, but I can’t figure out how to load the “available” data (fastqs) — to clarify instead of asking users to upload 5GB fastq files, which are already on the galaxy server, I would like for users to be able to “see” that data when setting up their pipeline without having to upload the data (ie use Get Data). Is this possible? When I search, I can only see how to do this for “Data Libraries”. Many Thanks! Brandi ~~~ Brandi Cantarel, PhD Bioinformatics Research Scientist Baylor Institute for Immunology Research Baylor Health Care System 214-818-8673 (office) ** This e-mail may contain confidential and/or privileged information. This information is intended only for the use of the individual(s) and entity(ies) to whom it is addressed. If you are the intended recipient, further disclosures are prohibited without proper authorization. If you are not the intended recipient (or have received this e-mail in error) please notify the sender immediately and destroy this e-mail. Any unauthorized copying, disclosure or distribution of the material in this e-mail is strictly forbidden and possibly a violation of federal or state law and regulations. Baylor Health Care System, its subsidiaries, and affiliates hereby claim all applicable privileges related to this information. ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Re: [galaxy-dev] Linking Data Files
On Wed, Jan 15, 2014 at 3:04 PM, Cantarel, Brandi L. brandi.canta...@baylorhealth.edu wrote: I can see where I can upload libraries from the galaxy server, but I can’t figure out how to load the “available” data (fastqs) — to clarify instead of asking users to upload 5GB fastq files, which are already on the galaxy server, I would like for users to be able to “see” that data when setting up their pipeline without having to upload the data (ie use Get Data). Is this possible? When I search, I can only see how to do this for “Data Libraries”. Data Libraries are probably the right way to handle this. If you have a large set of fastq data, would it be sufficient to load it all into a data library accessible to your users? Then the user would just have to browse the data library, click import to current history, and they're off and running. -Dannon ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
