Re: [galaxy-dev] New Tool - Can provide a template file to user
Thank you J. I will try that. Deepthi On 4/26/12, Jeremy Goecks wrote: >> Either user can upload a spreadsheet for that or I shall provide a >> template file to fill up the data. When I checked there is no provision >> for uploading a >> speadsheet in my galaxy instance. > > Two simple options: > > (1) have users convert their spreadsheet data to csv/tabular format; Galaxy > works well with tabular data. > > (2) create your own datatype: > > http://wiki.g2.bx.psu.edu/Admin/Datatypes/Adding%20Datatypes > > There are many examples for tabular data such as SAM, BED, GFF, etc., in the > Galaxy base—see tabular.py and interval.py > > Best, > J. -- Deepthi Theresa Thomas Kannanayakal 1919 University Drive NW, Apt. No. E104 T2N 4K7 Calgary, Alberta Canada Ph: (403) 483 7409, (403) 618 5956 Email: deepthither...@gmail.com ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] New Tool - Can provide a template file to user
> Either user can upload a spreadsheet for that or I shall provide a template > file to fill up the data. When I checked there is no provision for uploading a > speadsheet in my galaxy instance. Two simple options: (1) have users convert their spreadsheet data to csv/tabular format; Galaxy works well with tabular data. (2) create your own datatype: http://wiki.g2.bx.psu.edu/Admin/Datatypes/Adding%20Datatypes There are many examples for tabular data such as SAM, BED, GFF, etc., in the Galaxy base—see tabular.py and interval.py Best, J.___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
[galaxy-dev] New Tool - Can provide a template file to user
Hi all, I am trying to add a tool to galaxy. I want to collect some data from the user. The data may contain hundreds of records each has 7 or 8 fields. Either user can upload a spreadsheet for that or I shall provide a template file to fill up the data. When I checked there is no provision for uploading a speadsheet in my galaxy instance. What about the second method? Is it possible to provide a template file for the user? Deepthi ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
