Re: [galaxy-dev] New tool not recognised unless i reboot

2011-12-14 Thread Makis Ladoukakis 

I couldn't find a way to stop the instance through the terminal. Ctrl+C doesn't 
work so i just close the terminal itself. Is there a command that stops the 
instance?

 Date: Wed, 14 Dec 2011 17:32:41 +
 Subject: Re: [galaxy-dev] New tool not recognised unless i reboot
 From: p.j.a.c...@googlemail.com
 To: makis4e...@hotmail.com
 CC: galaxy-dev@lists.bx.psu.edu
 
 2011/12/14 Makis Ladoukakis makis4e...@hotmail.com:
  Dear galaxy users,
 
  I have downloaded a local instance of Galaxy on my linux distribution
  (ubuntu) and i am adding new tools i made myself. To add a new tool i follow
  all the steps (tool definition file and the modification of tool_conf.xml)
  and run 'sh run.sh' for Galaxy to include it in its interface. Nevertheless
  when i try to do the same later after i close Galaxy, when i run 'sh run.sh'
  again i get this error:
 
  socket.error: [Errno 98] Address already in use
 
 Did you stop the old Galaxy instance which is still running and
 using that network address?
 
 Peter
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Re: [galaxy-dev] New tool not recognised unless i reboot

2011-12-14 Thread Daniel Blankenberg 
Hi Makis,

Ordinarily in interactive mode, ctrl+c should work. However, when just using 
'run.sh' certain python/OS combinations experience issues. You'll need to 
manually kill your instance, e.g. using 'kill pid'. Next time you start 
Galaxy you can use 'run.sh --reload' which should enable interactive usage with 
ctrl-c working. 

You can also stat Galaxy daemonized using 'sh run.sh --daemon'; stop with sh 
run.sh --stop-daemon'.


Thanks for using Galaxy,

Dan


On Dec 14, 2011, at 3:36 PM, Makis Ladoukakis wrote:

 I couldn't find a way to stop the instance through the terminal. Ctrl+C 
 doesn't work so i just close the terminal itself. Is there a command that 
 stops the instance?
 
  Date: Wed, 14 Dec 2011 17:32:41 +
  Subject: Re: [galaxy-dev] New tool not recognised unless i reboot
  From: p.j.a.c...@googlemail.com
  To: makis4e...@hotmail.com
  CC: galaxy-dev@lists.bx.psu.edu
  
  2011/12/14 Makis Ladoukakis makis4e...@hotmail.com:
   Dear galaxy users,
  
   I have downloaded a local instance of Galaxy on my linux distribution
   (ubuntu) and i am adding new tools i made myself. To add a new tool i 
   follow
   all the steps (tool definition file and the modification of tool_conf.xml)
   and run 'sh run.sh' for Galaxy to include it in its interface. 
   Nevertheless
   when i try to do the same later after i close Galaxy, when i run 'sh 
   run.sh'
   again i get this error:
  
   socket.error: [Errno 98] Address already in use
  
  Did you stop the old Galaxy instance which is still running and
  using that network address?
  
  Peter
 ___
 Please keep all replies on the list by using reply all
 in your mail client.  To manage your subscriptions to this
 and other Galaxy lists, please use the interface at:
 
  http://lists.bx.psu.edu/

___
Please keep all replies on the list by using reply all
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:

  http://lists.bx.psu.edu/