[galaxy-dev] Parallel job through galaxy

2011-08-16 Thread shashi shekhar
Hi All,

 I have local instance of Galaxy .I have system of very good configuration
.it has many cores  and I want to use multiprocessor   for some tool. Have
you added any tool which uses multiprocessor
in Galaxy ? Provide me tool name . in my system pbs is installed . How can i
use multiprocessor in Galaxy ?

Regards
shashi shekhar
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Re: [galaxy-dev] Parallel job through galaxy

2011-08-16 Thread Peter Cock
On Tue, Aug 16, 2011 at 11:13 AM, shashi shekhar meshash...@gmail.com wrote:
 Thanks Peter for reply
  But i want to use galaxy for parallel programs like mpi and opemp .will it
 support ?how  can i configure for parallel programs ?

Please CC the mailing list.

Tools using openmp should be easy. MPI is more complicated. First
check you can submit test MPI jobs to PBS by hand, then setup the
job runner in Galaxy to use the same settings.

Peter

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